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Pdlim4 PDZ and LIM domain 4 [ Mus musculus (house mouse) ]

Gene ID: 30794, updated on 27-Jun-2015
Official Symbol
Pdlim4provided by MGI
Official Full Name
PDZ and LIM domain 4provided by MGI
Primary source
MGI:MGI:1353470
See related
Ensembl:ENSMUSG00000020388; Vega:OTTMUSG00000005656
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ril
Orthologs
See Pdlim4 in Epigenomics, MapViewer
Location:
11 B1.3; 11 32.13 cM
Exon count:
7
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 11 NC_000077.6 (54054928..54069032, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (53868430..53882519, complement)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 (organic cation transporter), member 21 Neighboring gene predicted gene 12219 Neighboring gene predicted gene, 30927 Neighboring gene solute carrier family 22 (organic cation transporter), member 4 Neighboring gene procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide Neighboring gene predicted gene 12223 Neighboring gene TBCC domain containing 1 pseudogene

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
actinin binding ISO
Inferred from Sequence Orthology
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
actin cytoskeleton organization ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
PDZ and LIM domain protein 4
Names
PDZ and LIM domain protein 4
LIM protein RIL
reversion induced LIM
reversion-induced LIM protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019417.3NP_062290.2  PDZ and LIM domain protein 4

    See identical proteins and their annotated locations for NP_062290.2

    Status: VALIDATED

    Source sequence(s)
    AB221672, AI385555, AL596444
    Consensus CDS
    CCDS24690.1
    UniProtKB/Swiss-Prot
    P70271
    Related
    ENSMUSP00000018755, OTTMUSP00000005828, ENSMUST00000018755, OTTMUST00000012586
    Conserved Domains (2) summary
    cd09451
    Location:255307
    LIM_RIL; The LIM domain of RIL
    cd00992
    Location:280
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p3 C57BL/6J

    Range
    54054928..54069032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006533511.2XP_006533574.1  

    UniProtKB/TrEMBL
    Q5SWV3
    Conserved Domains (1) summary
    cd00992
    Location:280
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

Alternate Mm_Celera

Genomic

  1. AC_000033.1 Alternate Mm_Celera

    Range
    58642620..58656709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)