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    HFE hemochromatosis [ Homo sapiens (human) ]

    Gene ID: 3077, updated on 13-Jun-2013
    Official Symbol
    HFEprovided by HGNC
    Official Full Name
    hemochromatosisprovided by HGNC
    Primary source
    HGNC:4886
    See related
    Ensembl:ENSG00000010704; HPRD:01993; MIM:613609; Vega:OTTHUMG00000016348
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HH; HFE1; HLA-H; MVCD7; TFQTL2
    Summary
    The protein encoded by this gene is a membrane protein that is similar to MHC class I-type proteins and associates with beta2-microglobulin (beta2M). It is thought that this protein functions to regulate iron absorption by regulating the interaction of the transferrin receptor with transferrin. The iron storage disorder, hereditary haemochromatosis, is a recessive genetic disorder that results from defects in this gene. At least nine alternatively spliced variants have been described for this gene. Additional variants have been found but their full-length nature has not been determined. [provided by RefSeq, Jul 2008]
    Location :
    6p21.3
    Sequence :
    Chromosome: 6; NC_000006.11 (26087509..26095469)

    Chromosome 6 - NC_000006.11Genomic Context describing neighboring genes Neighboring gene histone cluster 1, H3c Neighboring gene histone cluster 1, H1c Neighboring gene histone cluster 1, H4c Neighboring gene histone cluster 1, H1t

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Alzheimer's disease

    Summary from GeneReviews: Alzheimer Disease Overview Go to GeneReviews

    Disease Characteristics
    Alzheimer disease (AD) is characterized by dementia that typically begins with subtle and poorly recognized failure of memory and slowly becomes more severe and, eventually, incapacitating. Other common findings include confusion, poor judgment, language disturbance, agitation, withdrawal, and hallucinations. Occasionally, seizures, Parkinsonian features, increased muscle tone, myoclonus, incontinence, and mutism occur. Death usually results from general inanition, malnutrition, and pneumonia. The typical clinical duration of the disease is eight to ten years, with a range from one to 25 years. Approximately 25% of all AD is familial (i.e., >/=2 persons in a family have AD) of which approximately 95% is late onset (age >60-65 years) and 5% is early onset (age <65 years).
    Diagnosis Testing
    Establishing the diagnosis of Alzheimer disease relies on clinical-neuropathologic assessment. Neuropathologic findings of beta-amyloid plaques and intraneuronal neurofibrillary tangles remain the gold standard for diagnosis. The clinical diagnosis of AD, based on signs of slowly progressive dementia and findings of gross cerebral cortical atrophy on neuroimaging, is correct approximately 80%-90% of the time. The association of the APOE e4 allele with AD is significant; however, APOE genotyping is neither fully specific nor sensitive. While APOE genotyping may have an adjunct role in the diagnosis of AD in symptomatic individuals, it appears to have little role at this time in predictive testing of asymptomatic individuals. Three forms of early-onset familial AD (EOFAD) caused by mutations in one of three genes (APP, PSEN1, PSEN2) are recognized.
    Genetic Counseling
    Because AD is genetically heterogeneous, genetic counseling of persons with AD and their family members must be tailored to the information available for that family. It should be pointed out that AD is common and that the overall lifetime risk for any individual of developing dementia is approximately 10%-12%. Genetic counseling for people with non-familial AD and their family members must be empiric and relatively nonspecific. First-degree relatives of a simplex case of AD (i.e., single occurrence in a family) have a cumulative lifetime risk of developing AD of approximately 15%-30%, which is typically reported as a 20%-25% risk. This risk is approximately 2.5 times that of the background risk (~27% vs 10.4%). In contrast, early-onset familial Alzheimer disease (EOFAD) is inherited in an autosomal dominant manner.
    References

    Hereditary hemochromatosis

    Summary from GeneReviews: HFE-Associated Hereditary Hemochromatosis Go to GeneReviews

    Disease Characteristics
    HFE-associated hereditary hemochromatosis (HFE-HH) is characterized by inappropriately high absorption of iron by the gastrointestinal mucosa. The phenotypic spectrum of HFE-HH is now recognized to include Those with clinical HFE-HH, in which manifestations of end-organ damage secondary to iron storage are present; Those with biochemical HFE-HH, in which the only evidence of iron overload is increased transferrin-iron saturation and increased serum ferritin concentration; and Non-expressing p.Cys282Tyr homozygotes in whom neither clinical manifestations of HFE-HH nor iron overload are present. Clinical HFE-HH is characterized by excessive storage of iron in the liver, skin, pancreas, heart, joints, and testes. In untreated individuals: early symptoms may include abdominal pain, weakness, lethargy, and weight loss; the risk of cirrhosis is significantly increased when the serum ferritin is higher than 1,000 ng/mL; other findings may include progressive increase in skin pigmentation, diabetes mellitus, congestive heart failure and/or arrhythmias, arthritis, and hypogonadism. Clinical HFE-HH is more common in men than women.
    Diagnosis Testing
    The diagnosis of clinical HFE-HH in individuals with clinical findings consistent with HFE-HH and the diagnosis of biochemical HFE-HH are typically based on finding elevated transferrin-iron saturation 45% or higher and serum ferritin concentration above the upper limit of normal (i.e.,>300 ng/mL in men and >200 ng/mL in women) and two HFE-HH-causing mutations on confirmatory HFE molecular genetic testing. Although serum ferritin concentration may increase progressively over time in untreated individuals with HFE-HH, it is not specific for HFE-HH and, therefore, cannot be used alone for identification of individuals with HFE-HH.
    Genetic Counseling
    HFE-HH is inherited in an autosomal recessive manner. Risk to sibs: When both parents of an affected individual are heterozygous for the HFE mutation, the risk to sibs of inheriting two HFE mutations is 25%. However, because the carrier frequency for a mutant HFE allele in persons of European origin is high (11% or 1/9), on occasion one parent of an affected individual has two abnormal HFE alleles. In such instances, the risk to each sib of inheriting two HFE mutations is 50%. Risk to offspring: Offspring of an individual with HFE-HH inherit one mutant HFE allele from the affected parent. Because of the 1/9 chance that the other parent is a carrier for a mutant HFE allele, the risk to the offspring of inheriting two HFE mutations is approximately 5%. Prenatal testing: Although prenatal testing would be technically feasible for pregnancies at 25% or more risk, such requests would be highly unusual because HFE-HH is an adult-onset, treatable disorder with low clinical penetrance.
    References

    NHGRI GWAS Catalog

    show more
    Protein Gene Interaction Pubs
    Nef, p27 nef Myristoylation of HIV-1 Nef at position 2 and the PxxP proline-rich motif of Nef at positions 62-65 are required for Nef-induced downregulation of HFE; amino acid residue Y282 in HFE is involved in the downregulation by Nef PubMed
    nef HIV-1 Nef downregulates the macrophage-expressed MHC 1b protein HFE by rerouting HFE to a perinuclear structure that overlaps the trans-Golgi network, causing a 90% reduction of surface HFE PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    Q30201 P61769 B2M    HPRD  PubMed  
    Q30201 Q9UP52 TFR2    HPRD  PubMed  
    Q30201 P02786 TFRC    HPRD  PubMed  
    BioGRID:109325 BioGRID:107044 B2M    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109325 BioGRID:124085 SYVN1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109325 BioGRID:112894 TFR2    BioGRID  PubMed Co-crystal Structure 
    BioGRID:109325 BioGRID:112895 TFRC    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:109325 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-Western 

    Markers

    Homology

    Clone Names

    • MGC103790, MGC:150812, dJ221C16.10.1, IMAGE:40125754

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    antigen processing and presentation of peptide antigen via MHC class I IEA
    Inferred from Electronic Annotation
    more info
     
    cellular iron ion homeostasis TAS
    Traceable Author Statement
    more info
    PubMed 
    cellular response to iron ion starvation IEA
    Inferred from Electronic Annotation
    more info
     
    female pregnancy IEA
    Inferred from Electronic Annotation
    more info
     
    hormone biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    immune response IEA
    Inferred from Electronic Annotation
    more info
     
    iron ion import into cell IDA
    Inferred from Direct Assay
    more info
    PubMed 
    multicellular organismal iron ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
     
    protein complex assembly TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    MHC class I protein complex IEA
    Inferred from Electronic Annotation
    more info
     
    apical part of cell IDA
    Inferred from Direct Assay
    more info
    PubMed 
    basal part of cell IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasmic vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    early endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral to plasma membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    recycling endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    hereditary hemochromatosis protein
    Names
    hereditary hemochromatosis protein
    high Fe
    MHC class I-like protein HFE
    hereditary hemochromatosis protein HLA-H

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008720.1 RefSeqGene

      Range
      5001..12961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000410.3NP_000401.1  hereditary hemochromatosis protein isoform 1 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform.
      Source sequence(s)
      AF115265, AJ249337, U91328
      Consensus CDS
      CCDS4578.1
      UniProtKB/Swiss-Prot
      Q30201
      Conserved Domains (2) summary
      cd07698
      Location:223298
      Blast Score: 265
      IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
      pfam00129
      Location:27202
      Blast Score: 333
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    2. NM_139003.2NP_620572.1  hereditary hemochromatosis protein isoform 3 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) lacks an internal in-frame segment of the coding region, as compared to variant 1, resulting in a shorter protein (isoform 3).
      Source sequence(s)
      AF149804, AJ249335, U91328
      Consensus CDS
      CCDS47386.1
      UniProtKB/Swiss-Prot
      Q30201
      Conserved Domains (2) summary
      cd07698
      Location:110192
      Blast Score: 273
      IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
      pfam00129
      Location:27113
      Blast Score: 131
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    3. NM_139004.2NP_620573.1  hereditary hemochromatosis protein isoform 4 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) lacks an internal in-frame segment of the coding region, compared to variant 1, resulting in a shorter protein (isoform 4).
      Source sequence(s)
      AJ249337, U91328
      Consensus CDS
      CCDS4579.1
      UniProtKB/Swiss-Prot
      Q30201
      Related
      ENSP00000313776, OTTHUMP00000215790, ENST00000317896, OTTHUMT00000356137
      Conserved Domains (2) summary
      cd07698
      Location:131206
      Blast Score: 266
      IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
      pfam00129
      Location:27113
      Blast Score: 131
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    4. NM_139006.2NP_620575.1  hereditary hemochromatosis protein isoform 6 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (6) lacks an internal in-frame segment of the coding region, as compared to variant 1, resulting in a shorter protein (isoform 6).
      Source sequence(s)
      AF079407, AJ249335, U91328
      Consensus CDS
      CCDS54974.1
      UniProtKB/Swiss-Prot
      Q30201
      Conserved Domains (2) summary
      cd07698
      Location:207284
      Blast Score: 271
      IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
      pfam00129
      Location:27202
      Blast Score: 332
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    5. NM_139007.2NP_620576.1  hereditary hemochromatosis protein isoform 7 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (7) lacks an internal in-frame segment of the coding region, as compared to variant 1, resulting in a shorter protein isoform (7).
      Source sequence(s)
      AJ249336, U91328
      Consensus CDS
      CCDS4580.1
      UniProtKB/Swiss-Prot
      Q30201
      Related
      ENSP00000259699, OTTHUMP00000215788, ENST00000349999, OTTHUMT00000356135
      Conserved Domains (2) summary
      cd07698
      Location:135210
      Blast Score: 266
      IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
      pfam00129
      Location:27114
      Blast Score: 218
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    6. NM_139008.2NP_620577.1  hereditary hemochromatosis protein isoform 8 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (8) lacks two internal in-frame segments of the coding region, as compared to variant 1, resulting in a shorter protein (isoform 8).
      Source sequence(s)
      AF079409, AJ249335, U91328
      Consensus CDS
      CCDS54975.1
      UniProtKB/Swiss-Prot
      Q30201
      Conserved Domains (2) summary
      cd07698
      Location:119196
      Blast Score: 272
      IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
      pfam00129
      Location:27114
      Blast Score: 217
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    7. NM_139009.2NP_620578.1  hereditary hemochromatosis protein isoform 9 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (9) lacks an internal in-frame segment of the coding region through the use of an alternate splice acceptor site, as compared to variant 1, resulting in a shorter protein (isoform 9).
      Source sequence(s)
      AJ249335, U91328
      Consensus CDS
      CCDS47387.1
      UniProtKB/Swiss-Prot
      Q30201
      Conserved Domains (2) summary
      cd07698
      Location:200275
      Blast Score: 263
      IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
      pfam00129
      Location:23179
      Blast Score: 296
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    8. NM_139010.2NP_620579.1  hereditary hemochromatosis protein isoform 10 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (10) lacks an internal in-frame segment of the coding region, as compared to variant 1, resulting in a shorter protein (isoform 10).
      Source sequence(s)
      AJ250635, U91328
      Consensus CDS
      CCDS4581.1
      UniProtKB/Swiss-Prot
      Q30201
      Conserved Domains (1) summary
      cd07698
      Location:43118
      Blast Score: 269
      IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    9. NM_139011.2NP_620580.1  hereditary hemochromatosis protein isoform 11 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (11) lacks a large internal part of the coding region but the reading frame is maintained, as compared to variant 1. The protein encoded is the shortest isoform (11).
      Source sequence(s)
      AJ249338, U91328
      Consensus CDS
      CCDS4582.1
      UniProtKB/Swiss-Prot
      Q30201

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000006.11 Reference GRCh37.p10 Primary Assembly

      Range
      26087509..26095469
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000138.1 Alternate HuRef

      Range
      26030572..26038529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018917.1 Alternate CHM1_1.0

      Range
      26009917..26017875
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_139002.2: Suppressed sequence

      Description
      NM_139002.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    2. NM_139005.2: Suppressed sequence

      Description
      NM_139005.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

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