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    HBB hemoglobin, beta [ Homo sapiens (human) ]

    Gene ID: 3043, updated on 22-May-2013
    Official Symbol
    HBBprovided by HGNC
    Official Full Name
    hemoglobin, betaprovided by HGNC
    Primary source
    HGNC:4827
    See related
    Ensembl:ENSG00000244734; HPRD:00786; MIM:141900; Vega:OTTHUMG00000066678
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CD113t-C; beta-globin
    Summary
    The alpha (HBA) and beta (HBB) loci determine the structure of the 2 types of polypeptide chains in adult hemoglobin, Hb A. The normal adult hemoglobin tetramer consists of two alpha chains and two beta chains. Mutant beta globin causes sickle cell anemia. Absence of beta chain causes beta-zero-thalassemia. Reduced amounts of detectable beta globin causes beta-plus-thalassemia. The order of the genes in the beta-globin cluster is 5'-epsilon -- gamma-G -- gamma-A -- delta -- beta--3'. [provided by RefSeq, Jul 2008]
    Location :
    11p15.5
    Sequence :
    Chromosome: 11; NC_000011.9 (5246696..5248301, complement)

    Chromosome 11 - NC_000011.9Genomic Context describing neighboring genes Neighboring gene olfactory receptor, family 52, subfamily Z, member 1 (gene/pseudogene) Neighboring gene olfactory receptor, family 51, subfamily V, member 1 Neighboring gene hemoglobin, delta Neighboring gene hemoglobin, beta pseudogene 1

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    beta Thalassemia

    Summary from GeneReviews: Beta-Thalassemia Go to GeneReviews

    Disease Characteristics
    Beta-thalassemia (beta-thalassemia) is characterized by reduced synthesis of the hemoglobin subunit beta (hemoglobin beta chain) that results in microcytic hypochromic anemia, an abnormal peripheral blood smear with nucleated red blood cells, and reduced amounts of hemoglobin A (HbA) on hemoglobin analysis. Individuals with thalassemia major have severe anemia and hepatosplenomegaly; they usually come to medical attention within the first two years of life. Without treatment, affected children have severe failure to thrive and shortened life expectancy. Treatment with a regular transfusion program and chelation therapy, aimed at reducing transfusion iron overload, allows for normal growth and development and may improve the overall prognosis. Individuals with thalassemia intermedia present later and have milder anemia that only rarely requires transfusion. These individuals are at risk for iron overload secondary to increased intestinal absorption of iron as a result of ineffective erythropoiesis.
    Diagnosis Testing
    The diagnosis of beta-thalassemia relies on measuring red blood cell indices that reveal microcytic hypochromic anemia, nucleated red blood cells on peripheral blood smear, hemoglobin analysis that reveals decreased amounts of HbA and increased amounts of hemoglobin F (HbF) after age 12 months, and the clinical severity of anemia. Molecular genetic testing of HBB, the gene encoding the hemoglobin subunit beta, is available in clinical laboratories and may be useful for predicting the clinical phenotype in some cases as well as presymptomatic diagnosis of at-risk family members and prenatal diagnosis.
    Genetic Counseling
    The beta-thalassemias are inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Heterozygotes may be slightly anemic but are clinically asymptomatic. Carriers are often referred to as having thalassemia minor (or beta-thalassemia minor). Carrier testing for individuals at risk (including family members, gamete donors, and members of at-risk populations) is possible. Prenatal testing for pregnancies at increased risk is possible if the disease-causing mutations in the family are known.
    References

    Hb SS disease

    Summary from GeneReviews: Sickle Cell Disease Go to GeneReviews

    Disease Characteristics
    Sickle cell disease (SCD) is characterized by intermittent vaso-occlusive events and chronic hemolytic anemia. Vaso-occlusive events result in tissue ischemia leading to acute and chronic pain as well as organ damage that can affect any organ in the body, including the bones, lungs, liver, kidneys, brain, eyes, and joints. Dactylitis (pain and/or swelling of the hands or feet) in infants and young children is often the earliest manifestation of sickle cell disease. In children the spleen can become engorged with blood cells in a "splenic sequestration crisis." The spleen is also particularly subject to infarction and the majority of individuals with SCD are functionally asplenic in early childhood, increasing their risk for certain types of bacterial infections. Chronic hemolysis can result in varying degrees of anemia, jaundice, cholelithiasis, and delayed growth and sexual maturation. Individuals with the highest rates of hemolysis are predisposed to pulmonary artery hypertension, priapism, and leg ulcers but are relatively protected from vaso-occlusive pain.
    Diagnosis Testing
    The term "sickle cell disease" encompasses a group of symptomatic disorders associated with mutations in HBB and defined by the presence of hemoglobin S (Hb S). Normal human hemoglobin is a heterotetramer composed of two alpha-hemoglobin chains and two beta-hemoglobin chains. Hemoglobin S results from a point mutation in HBB, changing the sixth amino acid in the beta-hemoglobin chain from glutamic acid to valine (Glu6Val). Sickle cell anemia (homozygous Hb SS) accounts for 60%-70% of sickle cell disease in the US. Other forms of sickle cell disease result from coinheritance of Hb S with other abnormal beta-globin chain variants, the most common forms being sickle-hemoglobin C disease (Hb SC) and two types of sickle beta-thalassemia (Hb Sbeta(+)-thalassemia and Hb Sbeta degrees -thalassemia); rarer forms result from coinheritance of other Hb variants such as D-Punjab and O-Arab. The diagnosis of sickle cell disease is established by demonstrating the presence of significant quantities of Hb S by isoelectric focusing (IEF), cellulose acetate electrophoresis, high-performance liquid chromatography (HPLC), or (less commonly) DNA analysis. Targeted mutation analysis is used to identify the common mutations of HBB associated with hemoglobin S, hemoglobin C, and additional rarer mutations. HBB sequence analysis may be used to detect mutations associated with beta-thalassemia hemoglobin variants. Gel electrophoresis or HPLC can differentiate these disorders from heterozygous carriers of the Hb S mutation (Hb AS). In the US, mandatory newborn screening establishes the diagnosis of sickle cell disease in neonates with the goal of assuring referral to specialty care prior to the onset of symptoms.
    Genetic Counseling
    Sickle cell disease is inherited in an autosomal recessive manner. If one parent is a carrier of the HBB Hb S mutation and the other is a carrier of an HBB mutation (e.g., Hb S, Hb C, beta-thalassemia), each child has a 25% chance of being affected, a 50% chance of being unaffected and a carrier, and a 25% chance of being unaffected and not a carrier. Carrier detection for common forms of sickle cell disease is most commonly accomplished by HPLC. Prenatal diagnosis for pregnancies at increased risk for sickle cell disease is possible by molecular genetic testing if the HBB mutations have been identified in the parents.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    NC_000011.8 NP_006181.1 ORC2    BIND  PubMed Orc2 interacts with beta-globin origin. 
    NC_000011.8 NP_000928.1 POLR2A    BIND  PubMed Beta-globin interacts with pol II. 
    NC_000011.8 NP_066964.1 XRCC5    BIND  PubMed Ku80 interacts with beta-globin origin. 
    P68871 Hemoglobin alpha 2 HBA2    HPRD  PubMed  
    P68871 P69905 HBA2    HPRD  PubMed  
    P68871 P68871 HBB    HPRD  PubMed  
    P68871 P69892 HBG2    HPRD  PubMed  
    P68871 P02008 HBZ    HPRD  PubMed  
    P68871 P00738 HP    HPRD  PubMed  
    P68871 Selenoprotein T SELT    HPRD  PubMed  
    BioGRID:109293 BioGRID:106710 AKT1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109293 BioGRID:107452 CDK2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109293 BioGRID:108102 DMWD    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109293 BioGRID:115119 EIF4A3    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:109293 BioGRID:119934 GDAP1    BioGRID  PubMed Co-fractionation 
    BioGRID:109293 BioGRID:109289 HBA1    BioGRID  PubMed Co-crystal Structure; Two-hybrid 
    BioGRID:109293 BioGRID:109480 HP    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109293 BioGRID:117939 PABPC1    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:109293 BioGRID:115265 RBM8A    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:109293 BioGRID:119693 SELT    BioGRID  PubMed Two-hybrid 
    BioGRID:109293 BioGRID:116888 SMG6    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:109293 BioGRID:115218 SMG7    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:109293 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109293 BioGRID:119509 UCHL5    BioGRID  PubMed Reconstituted Complex 
    BioGRID:109293 BioGRID:111908 UPF1    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:109293 BioGRID:117490 UPF2    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:109293 BioGRID:122397 UPF3A    BioGRID  PubMed Affinity Capture-RNA; Protein-RNA 
    BioGRID:109293 BioGRID:122396 UPF3B    BioGRID  PubMed Protein-RNA 
    • African trypanosomiasis, organism-specific biosystem (from KEGG)
      African trypanosomiasis, organism-specific biosystemTrypanosoma brucei, the parasite responsible for African trypanosomiasis (sleeping sickness), are spread by the tsetse fly in sub-Saharan Africa. The parasites are able to pass through the blood-brai...
    • African trypanosomiasis, conserved biosystem (from KEGG)
      African trypanosomiasis, conserved biosystemTrypanosoma brucei, the parasite responsible for African trypanosomiasis (sleeping sickness), are spread by the tsetse fly in sub-Saharan Africa. The parasites are able to pass through the blood-brai...
    • Binding and Uptake of Ligands by Scavenger Receptors, organism-specific biosystem (from REACTOME)
      Binding and Uptake of Ligands by Scavenger Receptors, organism-specific biosystemScavenger receptors bind free extracellular ligands as the initial step in clearance of the ligands from the body (reviewed in Ascenzi et al. 2005, Areschoug and Gordon 2009, Nielsen et al. 2010). So...
    • Factors involved in megakaryocyte development and platelet production, organism-specific biosystem (from REACTOME)
      Factors involved in megakaryocyte development and platelet production, organism-specific biosystemMegakaryocytes (MKs) give rise to circulating platelets (thrombocytes) through terminal differentiation of MKs which release cytoplasmic fragments as circulating platelets. As MKs mature they underg...
    • Folate Metabolism, organism-specific biosystem (from WikiPathways)
      Folate Metabolism, organism-specific biosystem
      Folate Metabolism
    • Hemostasis, organism-specific biosystem (from REACTOME)
      Hemostasis, organism-specific biosystemHemostasis is a physiological response that culminates in the arrest of bleeding from an injured vessel. Under normal conditions the vascular endothelium supports vasodilation, inhibits platelet adhe...
    • Malaria, organism-specific biosystem (from KEGG)
      Malaria, organism-specific biosystemPlasmodium protozoa are parasites that account for malaria infection. Sporozoite forms of the parasite are injected by mosquito bites under the skin and are carried to the liver where they develop in...
    • Malaria, conserved biosystem (from KEGG)
      Malaria, conserved biosystemPlasmodium protozoa are parasites that account for malaria infection. Sporozoite forms of the parasite are injected by mosquito bites under the skin and are carried to the liver where they develop in...
    • Metabolism, organism-specific biosystem (from REACTOME)
      Metabolism, organism-specific biosystemMetabolic processes in human cells generate energy through the oxidation of molecules consumed in the diet and mediate the synthesis of diverse essential molecules not taken in the diet as well as th...
    • O2/CO2 exchange in erythrocytes, organism-specific biosystem (from REACTOME)
      O2/CO2 exchange in erythrocytes, organism-specific biosystemIn capillaries of the lungs erythrocytes release carbon dioxide (CO2) and acquire oxygen (O2). In other tissues of the body the reverse reaction occurs (reviewed in Nikinmaa 1997, Jensen 2004).In the...
    • Scavenging of Heme from Plasma, organism-specific biosystem (from REACTOME)
      Scavenging of Heme from Plasma, organism-specific biosystemFree heme is damaging to tissues as it intercalates into biologic membranes, perturbing lipid bilayers and promoting the conversion of low-density lipoprotein to cytotoxic oxidized products. Moreover...
    • Selenium Pathway, organism-specific biosystem (from WikiPathways)
      Selenium Pathway, organism-specific biosystem
      Selenium Pathway
    • Uptake of Carbon Dioxide and Release of Oxygen by Erythrocytes, organism-specific biosystem (from REACTOME)
      Uptake of Carbon Dioxide and Release of Oxygen by Erythrocytes, organism-specific biosystemCarbon dioxide (CO2) in plasma is hydrated to yield protons (H+) and bicarbonate (HCO3-) by carbonic anhydrase IV (CA4) located on the apical plasma membranes of endothelial cells. Plasma CO2 is also...
    • Uptake of Oxygen and Release of Carbon Dioxide by Erythrocytes, organism-specific biosystem (from REACTOME)
      Uptake of Oxygen and Release of Carbon Dioxide by Erythrocytes, organism-specific biosystemErythrocytes circulating through the capillaries of the lung must exchange carbon dioxide (CO2) for oxygen (O2) during their short (0.5-1 sec.) transit time in pulmonary tissue (Reviewed in Jensen 20...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    contributes_to haptoglobin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    heme binding IEA
    Inferred from Electronic Annotation
    more info
     
    hemoglobin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    iron ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    oxygen binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    oxygen transporter activity NAS
    Non-traceable Author Statement
    more info
    PubMed 
    contributes_to peroxidase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    bicarbonate transport TAS
    Traceable Author Statement
    more info
     
    blood coagulation TAS
    Traceable Author Statement
    more info
     
    hydrogen peroxide catabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nitric oxide transport NAS
    Non-traceable Author Statement
    more info
    PubMed 
    oxygen transport NAS
    Non-traceable Author Statement
    more info
    PubMed 
    oxygen transport TAS
    Traceable Author Statement
    more info
    PubMed 
    positive regulation of cell death IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of nitric oxide biosynthetic process NAS
    Non-traceable Author Statement
    more info
    PubMed 
    protein heterooligomerization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of blood pressure IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of blood vessel size IEA
    Inferred from Electronic Annotation
    more info
     
    renal absorption IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    response to hydrogen peroxide IDA
    Inferred from Direct Assay
    more info
    PubMed 
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    cytosol TAS
    Traceable Author Statement
    more info
     
    endocytic vesicle lumen TAS
    Traceable Author Statement
    more info
     
    extracellular region TAS
    Traceable Author Statement
    more info
     
    haptoglobin-hemoglobin complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    hemoglobin complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    hemoglobin complex NAS
    Non-traceable Author Statement
    more info
    PubMed 
    hemoglobin complex TAS
    Traceable Author Statement
    more info
    PubMed 
    Preferred Names
    hemoglobin subunit beta
    Names
    hemoglobin subunit beta
    beta globin chain
    hemoglobin beta chain

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_000007.3 RefSeqGene

      Range
      70545..72150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000518.4NP_000509.1  hemoglobin subunit beta

      Status: REVIEWED

      Source sequence(s)
      L48217
      Consensus CDS
      CCDS7753.1
      UniProtKB/TrEMBL
      D9YZU5
      UniProtKB/Swiss-Prot
      P68871
      Related
      ENSP00000333994, OTTHUMP00000069644, ENST00000335295, OTTHUMT00000142977
      Conserved Domains (1) summary
      cd01040
      Location:5142
      Blast Score: 277
      globin; Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen ...

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000011.9 Reference GRCh37.p10 Primary Assembly

      Range
      5246696..5248301, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000143.1 Alternate HuRef

      Range
      4905869..4907474, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018922.1 Alternate CHM1_1.0

      Range
      5160939..5162544, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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