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    HBA1 hemoglobin, alpha 1 [ Homo sapiens (human) ]

    Gene ID: 3039, updated on 18-May-2013
    Official Symbol
    HBA1provided by HGNC
    Official Full Name
    hemoglobin, alpha 1provided by HGNC
    Primary source
    HGNC:4823
    See related
    Ensembl:ENSG00000206172; HPRD:00784; MIM:141800; Vega:OTTHUMG00000060138
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HBH; CD31
    Summary
    The human alpha globin gene cluster located on chromosome 16 spans about 30 kb and includes seven loci: 5'- zeta - pseudozeta - mu - pseudoalpha-1 - alpha-2 - alpha-1 - theta - 3'. The alpha-2 (HBA2) and alpha-1 (HBA1) coding sequences are identical. These genes differ slightly over the 5' untranslated regions and the introns, but they differ significantly over the 3' untranslated regions. Two alpha chains plus two beta chains constitute HbA, which in normal adult life comprises about 97% of the total hemoglobin; alpha chains combine with delta chains to constitute HbA-2, which with HbF (fetal hemoglobin) makes up the remaining 3% of adult hemoglobin. Alpha thalassemias result from deletions of each of the alpha genes as well as deletions of both HBA2 and HBA1; some nondeletion alpha thalassemias have also been reported. [provided by RefSeq, Jul 2008]
    Annotation information
    Note: We are aware that there is inconsistency among GenBank, RefSeq, and other browsers about the gene order in the alpha globin cluster. According to review by staff at HbVar (http://globin.bx.psu.edu/hbvar/menu.html), the gene order, telomere to centromere, for these loci is ...HBZ(HBZ2)..HBZP(HBZ1)..HBA2..HBA1... [30 Jan 2008]
    Location :
    16p13.3
    Sequence :
    Chromosome: 16; NC_000016.9 (226679..227520)
    See HBA1 in Epigenomics, MapViewer

    Chromosome 16 - NC_000016.9Genomic Context describing neighboring genes Neighboring gene hemoglobin, alpha pseudogene 1 Neighboring gene hemoglobin, alpha 2 Neighboring gene hemoglobin, theta 1 Neighboring gene LUC7-like (S. cerevisiae)

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    alpha Thalassemia

    Summary from GeneReviews: Alpha-Thalassemia Go to GeneReviews

    Disease Characteristics
    Alpha-thalassemia (alpha-thalassemia) has two clinically significant forms: hemoglobin Bart hydrops fetalis (Hb Bart) syndrome and hemoglobin H (HbH) disease. Hb Bart syndrome, the most severe form, is characterized by fetal onset of generalized edema, pleural and pericardial effusions, and severe hypochromic anemia, in the absence of ABO or Rh blood group incompatibility. Clinical features include: hepatosplenomegaly, extramedullary erythropoiesis, hydrocephaly, and cardiac and urogenital defects. Death usually occurs in the neonatal period. HbH disease is characterized by microcytic hypochromic hemolytic anemia, hepatosplenomegaly, mild jaundice, and sometimes thalassemia-like bone changes. Carriers of alpha masculine-thalassemia (alpha-thalassemia trait) show microcytosis, hypochromia, and normal percentages of HbA2 and HbF. Carriers of alpha(+)-thalassemia (alpha-thalassemia silent carrier) have either a silent hematologic phenotype or present with a moderate thalassemia-like hematologic picture. Homozygosity for alpha(+)-thalassemia results in an alpha masculine-thalassemia (alpha-thalassemia trait) hematologic phenotype.
    Diagnosis Testing
    All four alpha-globin alleles are deleted or inactivated in Hb Bart syndrome. Deletion or dysfunction of three alleles results in HbH disease. Alpha masculine-thalassemia results from deletion or dysfunction of two alleles, and alpha(+)-thalassemia results from deletion or dysfunction of one allele. Testing for alpha-thalassemia includes: hematologic testing of red blood cell indices, peripheral blood smear, supravital stain to detect RBC inclusion bodies, and qualitative and quantitative hemoglobin analysis. HBA1, the gene encoding alpha1-globin, and HBA2, the gene encoding alpha2-globin, are the two genes most commonly associated with alpha-thalassemia. Molecular genetic testing of HBA1 and HBA2 detects deletions in about 90% and point mutations in about 10% of affected individuals.
    Genetic Counseling
    Alpha-thalassemia is usually inherited in an autosomal recessive manner. At conception, each sib of an individual with Hb Bart syndrome has a 25% chance of having Hb Bart syndrome, a 50% chance of having alpha masculine-thalassemia (alpha-thalassemia trait), and a 25% chance of being unaffected and not a carrier. Once an at-risk sib is known to be unaffected, the risk of his/her having alpha masculine-thalassemia (alpha-thalassemia trait) is 2/3. At conception, if one parent has alpha degrees -thalassemia and the other is an alpha(+)-thalassemia silent carrier, each sib of an individual with HbH disease has a 25% chance of having HbH disease, a 25% chance of having alpha masculine-thalassemia (alpha-thalassemia trait), a 25% chance of having alpha(+)-thalassemia (alpha-thalassemia silent carrier), and a 25% chance of being unaffected and not a carrier. Once an at-risk sib is known to be unaffected, the risk of his/her having either alpha masculine-thalassemia (alpha-thalassemia trait) or alpha(+)-thalassemia (alpha-thalassemia silent carrier) is 2/3. Each child of an individual with HbH disease inherits the mutation for either alpha masculine-thalassemia or alpha(+)-thalassemia and is thus an obligate heterozygote; risk to the child for disease depends on the allele inherited from the other parent. Family members, members of ethnic groups at risk, and gamete donors should be considered for carrier testing. Couples who are members of populations at risk for alpha masculine-thalassemia carrier status can be identified prior to pregnancy to identify those at risk of conceiving a fetus with Hb Bart syndrome. Prenatal testing may be carried out for couples who are at high risk of having a fetus with Hb Bart syndrome or for a pregnancy in which one parent is a known alpha masculine-thalassemia carrier and it is unknown whether the other parent has the mutation.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:109289 BioGRID:106832 APOA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109289 BioGRID:107019 ATP6AP1    BioGRID  PubMed Two-hybrid 
    BioGRID:109289 BioGRID:107603 CLU    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109289 BioGRID:107985 DAXX    BioGRID  PubMed Two-hybrid 
    BioGRID:109289 BioGRID:108621 FN1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109289 BioGRID:109293 HBB    BioGRID  PubMed Co-crystal Structure; Two-hybrid 
    BioGRID:109289 BioGRID:109883 ITGA4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109289 BioGRID:111700 PTEN    BioGRID  PubMed Two-hybrid 
    BioGRID:109289 BioGRID:112412 SLC4A1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109289 BioGRID:124174 SPINK7    BioGRID  PubMed Two-hybrid 
    BioGRID:109289 BioGRID:113185 UBE3A    BioGRID  PubMed Two-hybrid 
    BioGRID:109289 BioGRID:119509 UCHL5    BioGRID  PubMed Reconstituted Complex 
    BioGRID:109289 BioGRID:113255 VCAM1    BioGRID  PubMed Affinity Capture-MS 
    • African trypanosomiasis, organism-specific biosystem (from KEGG)
      African trypanosomiasis, organism-specific biosystemTrypanosoma brucei, the parasite responsible for African trypanosomiasis (sleeping sickness), are spread by the tsetse fly in sub-Saharan Africa. The parasites are able to pass through the blood-brai...
    • African trypanosomiasis, conserved biosystem (from KEGG)
      African trypanosomiasis, conserved biosystemTrypanosoma brucei, the parasite responsible for African trypanosomiasis (sleeping sickness), are spread by the tsetse fly in sub-Saharan Africa. The parasites are able to pass through the blood-brai...
    • Binding and Uptake of Ligands by Scavenger Receptors, organism-specific biosystem (from REACTOME)
      Binding and Uptake of Ligands by Scavenger Receptors, organism-specific biosystemScavenger receptors bind free extracellular ligands as the initial step in clearance of the ligands from the body (reviewed in Ascenzi et al. 2005, Areschoug and Gordon 2009, Nielsen et al. 2010). So...
    • Malaria, organism-specific biosystem (from KEGG)
      Malaria, organism-specific biosystemPlasmodium protozoa are parasites that account for malaria infection. Sporozoite forms of the parasite are injected by mosquito bites under the skin and are carried to the liver where they develop in...
    • Malaria, conserved biosystem (from KEGG)
      Malaria, conserved biosystemPlasmodium protozoa are parasites that account for malaria infection. Sporozoite forms of the parasite are injected by mosquito bites under the skin and are carried to the liver where they develop in...
    • Metabolism, organism-specific biosystem (from REACTOME)
      Metabolism, organism-specific biosystemMetabolic processes in human cells generate energy through the oxidation of molecules consumed in the diet and mediate the synthesis of diverse essential molecules not taken in the diet as well as th...
    • O2/CO2 exchange in erythrocytes, organism-specific biosystem (from REACTOME)
      O2/CO2 exchange in erythrocytes, organism-specific biosystemIn capillaries of the lungs erythrocytes release carbon dioxide (CO2) and acquire oxygen (O2). In other tissues of the body the reverse reaction occurs (reviewed in Nikinmaa 1997, Jensen 2004).In the...
    • Scavenging of Heme from Plasma, organism-specific biosystem (from REACTOME)
      Scavenging of Heme from Plasma, organism-specific biosystemFree heme is damaging to tissues as it intercalates into biologic membranes, perturbing lipid bilayers and promoting the conversion of low-density lipoprotein to cytotoxic oxidized products. Moreover...
    • Selenium Pathway, organism-specific biosystem (from WikiPathways)
      Selenium Pathway, organism-specific biosystem
      Selenium Pathway
    • Uptake of Carbon Dioxide and Release of Oxygen by Erythrocytes, organism-specific biosystem (from REACTOME)
      Uptake of Carbon Dioxide and Release of Oxygen by Erythrocytes, organism-specific biosystemCarbon dioxide (CO2) in plasma is hydrated to yield protons (H+) and bicarbonate (HCO3-) by carbonic anhydrase IV (CA4) located on the apical plasma membranes of endothelial cells. Plasma CO2 is also...
    • Uptake of Oxygen and Release of Carbon Dioxide by Erythrocytes, organism-specific biosystem (from REACTOME)
      Uptake of Oxygen and Release of Carbon Dioxide by Erythrocytes, organism-specific biosystemErythrocytes circulating through the capillaries of the lung must exchange carbon dioxide (CO2) for oxygen (O2) during their short (0.5-1 sec.) transit time in pulmonary tissue (Reviewed in Jensen 20...

    Markers

    Homology

    Clone Names

    • MGC126895, MGC126897
    Preferred Names
    hemoglobin subunit alpha
    Names
    hemoglobin subunit alpha
    alpha-globin
    alpha-1 globin
    alpha-1-globin
    alpha one globin
    hemoglobin alpha chain
    hemoglobin alpha-1 chain
    hemoglobin alpha 1 globin chain

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_000006.1 RefSeqGene

      Range
      37543..38384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000558.3NP_000549.1  hemoglobin subunit alpha

      Status: REVIEWED

      Source sequence(s)
      AH005275
      Consensus CDS
      CCDS10399.1
      UniProtKB/TrEMBL
      D1MGQ2
      UniProtKB/Swiss-Prot
      P69905
      Related
      ENSP00000322421, OTTHUMP00000066501, ENST00000320868, OTTHUMT00000133459
      Conserved Domains (1) summary
      cd01040
      Location:4137
      Blast Score: 262
      globin; Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen ...

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000016.9 Reference GRCh37.p10 Primary Assembly

      Range
      226679..227520
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000148.1 Alternate HuRef

      Range
      144721..145562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018927.1 Alternate CHM1_1.0

      Range
      166842..167683
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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