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Tex30 testis expressed 30 [ Rattus norvegicus (Norway rat) ]

Gene ID: 301381, updated on 13-Apr-2024

Summary

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Official Symbol
Tex30provided by RGD
Official Full Name
testis expressed 30provided by RGD
Primary source
RGD:1309095
See related
Ensembl:ENSRNOG00000011658 AllianceGenome:RGD:1309095
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309095
Summary
Predicted to enable hydrolase activity. Orthologous to human TEX30 (testis expressed 30). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 75.7), Spleen (RPKM 37.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
9q22
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (53735512..53744672, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (46243416..46252273, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (50858737..50868238, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C14, pseudogene 2 Neighboring gene coiled-coil domain containing 168 Neighboring gene protein O-glucosyltransferase 2 Neighboring gene basic, immunoglobulin-like variable motif containing Neighboring gene ERCC excision repair 5, endonuclease

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
testis-expressed protein 30
Names
testis-expressed sequence 30 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395634.1 → NP_001382563.1  testis-expressed protein 30

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    A0A8I5ZZM4, A6INS1, D3ZL12
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    53735512..53744672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039083277.2 → XP_038939205.1  testis-expressed protein 30 isoform X2

    Conserved Domains (1) summary
    cl21494
    Location:21 → 142
    Abhydrolase; alpha/beta hydrolases

  2. XM_039083279.2 → XP_038939207.1  testis-expressed protein 30 isoform X2

    Conserved Domains (1) summary
    cl21494
    Location:21 → 142
    Abhydrolase; alpha/beta hydrolases

  3. XM_039083270.2 → XP_038939198.1  testis-expressed protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZM4, A6INS1, D3ZL12
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

  4. XM_039083276.2 → XP_038939204.1  testis-expressed protein 30 isoform X2

    Conserved Domains (1) summary
    cl21494
    Location:21 → 142
    Abhydrolase; alpha/beta hydrolases

  5. XM_039083267.2 → XP_038939195.1  testis-expressed protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZM4, A6INS1, D3ZL12
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

  6. XM_039083278.2 → XP_038939206.1  testis-expressed protein 30 isoform X2

    Conserved Domains (1) summary
    cl21494
    Location:21 → 142
    Abhydrolase; alpha/beta hydrolases

  7. XM_039083269.2 → XP_038939197.1  testis-expressed protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZM4, A6INS1, D3ZL12
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

  8. XM_039083284.2 → XP_038939212.1  testis-expressed protein 30 isoform X2

    Conserved Domains (1) summary
    cl21494
    Location:21 → 142
    Abhydrolase; alpha/beta hydrolases

  9. XM_039083275.2 → XP_038939203.1  testis-expressed protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZM4, A6INS1, D3ZL12
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

  10. XM_039083272.2 → XP_038939200.1  testis-expressed protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZM4, A6INS1, D3ZL12
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

  11. XM_039083273.2 → XP_038939201.1  testis-expressed protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZM4, A6INS1, D3ZL12
    Related
    ENSRNOP00000015600.4
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

  12. XM_039083271.1 → XP_038939199.1  testis-expressed protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZM4, A6INS1, D3ZL12
    Related
    ENSRNOP00000085625.1, ENSRNOT00000106819.1
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

  13. XM_039083282.2 → XP_038939210.1  testis-expressed protein 30 isoform X2

    Conserved Domains (1) summary
    cl21494
    Location:21 → 142
    Abhydrolase; alpha/beta hydrolases

  14. XM_039083280.2 → XP_038939208.1  testis-expressed protein 30 isoform X2

    Conserved Domains (1) summary
    cl21494
    Location:21 → 142
    Abhydrolase; alpha/beta hydrolases

  15. XM_039083274.2 → XP_038939202.1  testis-expressed protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZM4, A6INS1, D3ZL12
    Conserved Domains (1) summary
    cl21494
    Location:32 → 219
    Abhydrolase; alpha/beta hydrolases

  16. XM_039083281.2 → XP_038939209.1  testis-expressed protein 30 isoform X2

    Conserved Domains (1) summary
    cl21494
    Location:21 → 142
    Abhydrolase; alpha/beta hydrolases

  17. XM_063266932.1 → XP_063123002.1  testis-expressed protein 30 isoform X1

    UniProtKB/TrEMBL
    A6INS1, D3ZL12
Nucleotide Protein Strain
Heading Accession and Version

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