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    GUCY2D guanylate cyclase 2D, membrane (retina-specific) [ Homo sapiens ]

    Gene ID: 3000, updated on 19-May-2012

    Summary

    Official Symbol
    GUCY2Dprovided by HGNC
    Official Full Name
    guanylate cyclase 2D, membrane (retina-specific)provided by HGNC
    Primary source
    HGNC:4689
    See related
    Ensembl:ENSG00000132518; HPRD:02550; MIM:600179; Vega:OTTHUMG00000108169
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LCA; CYGD; LCA1; RCD2; CORD5; CORD6; GUC2D; ROSGC; retGC; GUC1A4; RETGC-1; ROS-GC1
    Summary
    This gene encodes a retina-specific guanylate cyclase, which is a member of the membrane guanylyl cyclase family. Like other membrane guanylyl cyclases, this enzyme has a hydrophobic amino-terminal signal sequence followed by a large extracellular domain, a single membrane spanning domain, a kinase homology domain, and a guanylyl cyclase catalytic domain. In contrast to other membrane guanylyl cyclases, this enzyme is not activated by natriuretic peptides. Mutations in this gene result in Leber congenital amaurosis and cone-rod dystrophy-6 diseases. [provided by RefSeq, Dec 2008]

    Genomic context

    Location :
    17p13.1
    Sequence :
    Chromosome: 17; NC_000017.10 (7905988..7923658)
    See GUCY2D in Epigenomics, MapViewer

    Chromosome 17 - NC_000017.10Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex 1 Neighboring gene centrobin, centrosomal BRCA2 interacting protein Neighboring gene arachidonate 15-lipoxygenase, type B Neighboring gene arachidonate lipoxygenase 3 pseudogene

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Cone dystrophy, progressive

    Leber congenital amaurosis 1

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Leber congenital amaurosis (LCA), a severe dystrophy of the retina, typically becomes evident in the first year of life. Visual function is usually poor and often accompanied by nystagmus, sluggish or near-absent pupillary responses, photophobia, high hyperopia, and keratoconus. Visual acuity is rarely better than 20/400. A characteristic finding is Franceschetti's oculo-digital sign, comprising eye poking, pressing, and rubbing. The appearance of the fundus is extremely variable. While the retina may initially appear normal, a pigmentary retinopathy reminiscent of retinitis pigmentosa is frequently observed later in childhood. The electroretinogram (ERG) is characteristically "nondetectable" or severely subnormal.
    Diagnosis Testing
    The diagnosis of LCA is established by clinical findings. Molecular genetic testing is clinically available for the 12 genes currently known to be associated with LCA: GUCY2D (locus name: LCA1), RPE65 (LCA2), SPATA7 (LCA3), AIPL1 (LCA4), LCA5 (LCA5), RPGRIP1 (LCA6), CRX (LCA7), CRB1 (LCA8), CEP290 (LCA10), IMPDH1 (LCA11), RD3 (LCA12), and RDH12 (LCA13). Together, mutation in these genes is estimated to account for, depending on the survey, about 40%-50% of all LCA. At least one other disease locus for LCA has been reported, but the gene is not known.
    Genetic Counseling
    Most often LCA is inherited in an autosomal recessive manner. At conception, each sib of an individual with recessively inherited LCA has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk family members and prenatal testing for pregnancies at increased risk may be possible if the disease-causing mutations in the family are known. Rarely, LCA is inherited in an autosomal dominant manner as a result of mutations within CRX; the possibility of autosomal dominant inheritance resulting from a de novo CRX mutation should be considered in individuals with LCA and no family history of the disease.
    References

    Retinal cone dystrophy 2

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    Q02846 P43080 GUCA1A    HPRD  PubMed  
    Q02846 Q9UMX6 GUCA1B    HPRD  PubMed  
    Q02846 Q16661 GUCA2B    HPRD  PubMed  
    Q02846 O75916 RGS9    HPRD  PubMed  
    Q02846 P04271 S100B    HPRD  PubMed  
    BioGRID:109255 BioGRID:229918 Ankmy2    BioGRID  PubMed Affinity Capture-Western 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    guanylate cyclase activity IEA
    Inferred from Electronic Annotation
    more info
     
    identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    receptor activity TAS
    Traceable Author Statement
    more info
    PubMed 
    transferase activity, transferring phosphorus-containing groups IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cGMP biosynthetic process TAS
    Traceable Author Statement
    more info
    PubMed 
    intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    receptor guanylyl cyclase signaling pathway TAS
    Traceable Author Statement
    more info
    PubMed 
    response to stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    visual perception IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    integral to plasma membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    nuclear outer membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    retinal guanylyl cyclase 1
    Names
    retinal guanylyl cyclase 1
    ROS-GC
    guanylate cyclase 2D, retinal
    rod outer segment membrane guanylate cyclase
    NP_000171.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009092.1 RefSeqGene

      Range
      5001..22671
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000180.3NP_000171.1  retinal guanylyl cyclase 1

      Status: REVIEWED

      Source sequence(s)
      AC104581, BM931704, M92432
      Consensus CDS
      CCDS11127.1
      UniProtKB/Swiss-Prot
      Q02846
      Related
      ENSP00000254854, OTTHUMP00000135309, ENST00000254854, OTTHUMT00000226973
      Conserved Domains (6) summary
      cd06371
      Location:55431
      Blast Score: 1183
      PBP1_sensory_GC_DEF_like; Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues
      cd07302
      Location:8781056
      Blast Score: 528
      CHD; cyclase homology domain
      cd00180
      Location:562799
      Blast Score: 274
      PKc; Catalytic domain of Protein Kinases
      smart00044
      Location:8461036
      Blast Score: 716
      CYCc; Adenylyl- / guanylyl cyclase, catalytic domain
      pfam07701
      Location:846865
      Blast Score: 101
      HNOBA; Heme NO binding associated
      pfam07714
      Location:554798
      Blast Score: 289
      Pkinase_Tyr; Protein tyrosine kinase

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000017.10 Reference GRCh37.p5 Primary Assembly

      Range
      7905988..7923658
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000149.1 Alternate HuRef

      Range
      7800798..7818448
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AC104581.22 (165905..183574) None
    genomic AJ222657.1 CAA10914.1
    genomic CH471108.2 EAW90103.1
    genomic L26921.1 AAA60366.1
    mRNA BM931704.1 None
    mRNA M92432.1 AAA60547.1
    other-genetic BC148421.1 AAI48422.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q02846.2 GenPept UniProtKB/Swiss-Prot:Q02846

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