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    OBP2B odorant binding protein 2B [ Homo sapiens ]

    Gene ID: 29989, updated on 11-May-2012
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    Summary

    Official Symbol
    OBP2Bprovided by HGNC
    Official Full Name
    odorant binding protein 2Bprovided by HGNC
    Primary source
    HGNC:23381
    Locus tag
    UNQ653/PRO1283
    See related
    Ensembl:ENSG00000171102; HPRD:05209; MIM:604606; Vega:OTTHUMG00000020860
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    hOBPIIb; MGC119022
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    Genomic context

    Location :
    9q34
    Sequence :
    Chromosome: 9; NC_000009.11 (136080666..136084628, complement)
    See OBP2B in Epigenomics, MapViewer

    Chromosome 9 - NC_000009.11Genomic Context describing neighboring genes Neighboring gene ral guanine nucleotide dissociation stimulator Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 Neighboring gene lipocalin 1 pseudogene 1 Neighboring gene ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. TLR8-dependent TNF-(alpha) overexpression in Fanconi anemia group C cells. Vanderwerf SM, et al. Blood, 2009 Dec 17. PMID 19850743.
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334.
    3. DNA sequence and analysis of human chromosome 9. Humphray SJ, et al. Nature, 2004 May 27. PMID 15164053.
    4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. Clark HF, et al. Genome Res, 2003 Oct. PMID 12975309.
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932.

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Phenotypes

    Review eQTL and phenotype association data in this region using PheGenI

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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:119014 BioGRID:113164 UBC    BioGRID  PubMed Reconstituted Complex 
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    General gene information

    Markers

    Genotypes

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    odorant binding NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    chemosensory behavior TAS
    Traceable Author Statement
    more info
    		 PubMed 
    response to stimulus IEA
    Inferred from Electronic Annotation
    more info
    		  
    sensory perception of smell NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
    		  
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    odorant-binding protein 2b
    Names
    odorant-binding protein 2b
    OBPIIb
    odorant-binding protein IIb
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    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_014581.2 → NP_055396.1  odorant-binding protein 2b precursor

      Status: VALIDATED

      Source sequence(s)
      AW513637, AY358981, BX101545
      Consensus CDS
      CCDS6961.1
      UniProtKB/Swiss-Prot
      Q9NPH6
      Related
      ENSP00000361104, OTTHUMP00000022463, ENST00000372034, OTTHUMT00000054851
      Conserved Domains (1) summary
      cl01150
      Location:26 – 164
      Blast Score: 294
      Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000009.11 Reference GRCh37.p5 Primary Assembly

      Range
      136080666..136084628, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh37.p5 PATCHES

    Genomic

    1. NW_003315925.1 Reference GRCh37.p5 PATCHES

      Range
      31225..35187, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000141.1 Alternate HuRef

      Range
      105573630..105577592, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AJ251025.1 CAB71322.1
    genomic AL732364.9 CAH73779.1
    genomic AL772161.10 (4127..8089) None
    genomic CH471090.1 EAW88048.1
      EAW88049.1
      EAW88050.1
      EAW88051.1
      EAW88052.1
    mRNA AJ251026.1 CAB71323.1
    mRNA AJ251027.1 CAB71324.1
    mRNA AJ251028.1 CAB71325.1
    mRNA AW513637.1 None
    mRNA AY358981.1 AAQ89340.1
    mRNA BC096717.1 AAH96717.1
    mRNA BC098125.1 AAH98125.1
    mRNA BC098151.1 AAH98151.1
    mRNA BC098340.1 AAH98340.1
    mRNA BX101545.1 None
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9NPH6.1 GenPept UniProtKB/Swiss-Prot:Q9NPH6
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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    Research Materials
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