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SCHIP1 schwannomin interacting protein 1 [ Homo sapiens (human) ]

Gene ID: 29970, updated on 26-May-2016
Official Symbol
SCHIP1provided by HGNC
Official Full Name
schwannomin interacting protein 1provided by HGNC
Primary source
HGNC:HGNC:15678
See related
Ensembl:ENSG00000151967 Ensembl:ENSG00000250588 HPRD:15302; Vega:OTTHUMG00000158934; Vega:OTTHUMG00000162426
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SCHIP-1
Orthologs
Location:
3q25.32-q25.33
Exon count:
9
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 3 NC_000003.12 (159273247..159897366)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (158991036..159615155)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374182 Neighboring gene IQCJ-SCHIP1 readthrough Neighboring gene IQ motif containing J Neighboring gene microRNA 3919 Neighboring gene ribosomal protein S2 pseudogene 19 Neighboring gene uncharacterized LOC105374184 Neighboring gene IQCJ-SCHIP1 readthrough antisense RNA 1 Neighboring gene chromosome 9 open reading frame 78 pseudogene Neighboring gene uncharacterized LOC101928351 Neighboring gene uncharacterized LOC105374183 Neighboring gene IL12A antisense RNA 1 Neighboring gene long intergenic non-protein coding RNA 1100 Neighboring gene interleukin 12A

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NHGRI GWAS Catalog

Description
Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.
NHGRI GWA Catalog
Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.
NHGRI GWA Catalog
Newly identified genetic risk variants for celiac disease related to the immune response.
NHGRI GWA Catalog
Products Interactant Other Gene Complex Source Pubs Description

Markers

Readthrough IQCJ-SCHIP1

Readthrough gene: IQCJ-SCHIP1, Included gene: IQCJ

Homology

Clone Names

  • FLJ39160

Gene Ontology Provided by GOA

Function Evidence Code Pubs
identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
schwannomin-interacting protein 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001197107.1NP_001184036.1  schwannomin-interacting protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001184036.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1, resulting in an isoform (2, also known as SCHIP-1-D241/253) that is shorter than isoform 1.
    Source sequence(s)
    AF145715, BC036535, CA431197
    Consensus CDS
    CCDS56292.1
    UniProtKB/Swiss-Prot
    Q9P0W5
    Related
    ENSP00000400942, OTTHUMP00000213676, ENST00000412423, OTTHUMT00000352559
    Conserved Domains (1) summary
    pfam10148
    Location:240474
    SCHIP-1; Schwannomin-interacting protein 1
  2. NM_001197108.1NP_001184037.1  schwannomin-interacting protein 1 isoform 3

    See identical proteins and their annotated locations for NP_001184037.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in an isoform (3, also known as SCHIP-1-D22/253) that is shorter than isoform 1.
    Source sequence(s)
    AF145714, BC036535, CA431197
    Consensus CDS
    CCDS56293.1
    UniProtKB/Swiss-Prot
    Q9P0W5
    Related
    ENSP00000436076, OTTHUMP00000213679, ENST00000527095, OTTHUMT00000352563
    Conserved Domains (1) summary
    pfam10148
    Location:19255
    SCHIP-1; Schwannomin-interacting protein 1
  3. NM_001197109.1NP_001184038.1  schwannomin-interacting protein 1 isoform 4

    See identical proteins and their annotated locations for NP_001184038.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses an alternate start codon, compared to variant 1. The encoded isoform (4) has a distinct and shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AK091871, CA431197, DB466706
    Consensus CDS
    CCDS56294.1
    UniProtKB/Swiss-Prot
    Q9P0W5
    Related
    ENSP00000404860, OTTHUMP00000213677, ENST00000445224, OTTHUMT00000352560
    Conserved Domains (1) summary
    pfam10148
    Location:8244
    SCHIP-1; Schwannomin-interacting protein 1
  4. NM_014575.3NP_055390.1  schwannomin-interacting protein 1 isoform 1

    See identical proteins and their annotated locations for NP_055390.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AF145713, BC036535, CA431197
    Consensus CDS
    CCDS3186.1
    UniProtKB/Swiss-Prot
    Q9P0W5
    Related
    ENSP00000337239, OTTHUMP00000213674, ENST00000337808, OTTHUMT00000352557
    Conserved Domains (1) summary
    pfam10148
    Location:251487
    SCHIP-1; Schwannomin-interacting protein 1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p2 Primary Assembly

    Range
    159273247..159897366
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018914.2 Alternate CHM1_1.1

    Range
    158953931..159578052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)