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Lrrc9 leucine rich repeat containing 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 299129, updated on 30-Mar-2024

Summary

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Official Symbol
Lrrc9provided by RGD
Official Full Name
leucine rich repeat containing 9provided by RGD
Primary source
RGD:1565716
See related
Ensembl:ENSRNOG00000005409 AllianceGenome:RGD:1565716
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565716
Summary
Orthologous to human LRRC9 (leucine rich repeat containing 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 76.5), Lung (RPKM 6.6) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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Location:
6q24
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (96746972..96831840)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (91017739..91095847)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (95205131..95290848)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479399 Neighboring gene ribosomal protein L36A, pseudogene 20 Neighboring gene uncharacterized LOC102549502 Neighboring gene pecanex 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
leucine-rich repeat-containing protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191613.1 → NP_001178542.1  leucine-rich repeat-containing protein 9

    See identical proteins and their annotated locations for NP_001178542.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000006
    UniProtKB/TrEMBL
    A6HC36
    Conserved Domains (3) summary
    sd00033
    Location:709 → 730
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:685 → 1014
    internalin_A; class 1 internalin InlA
    cd21340
    Location:85 → 236
    PPP1R42; protein phosphatase 1 regulatory subunit 42

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    96746972..96831840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063261711.1 → XP_063117781.1  leucine-rich repeat-containing protein 9 isoform X1

  2. XM_039111997.2 → XP_038967925.1  leucine-rich repeat-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    A6HC36
    Conserved Domains (3) summary
    sd00033
    Location:709 → 730
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:685 → 1014
    internalin_A; class 1 internalin InlA
    cd21340
    Location:85 → 236
    PPP1R42; protein phosphatase 1 regulatory subunit 42

RNA

  1. XR_005505474.2 RNA Sequence

  2. XR_005505472.2 RNA Sequence

  3. XR_005505473.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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