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Cabp5 calcium binding protein 5 [ Mus musculus (house mouse) ]

Gene ID: 29865, updated on 8-May-2016
Official Symbol
Cabp5provided by MGI
Official Full Name
calcium binding protein 5provided by MGI
Primary source
MGI:MGI:1352746
See related
Ensembl:ENSMUSG00000005649 Vega:OTTMUSG00000027135
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
Location:
7; 7 A2
Exon count:
10
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 7 NC_000073.6 (13383295..13408880)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (13983504..13994227)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene phospholipase A2, group IVC (cytosolic, calcium-independent) Neighboring gene ribosomal protein S8, pseudogene 4 Neighboring gene phospholipase A2, group IVC (cytosolic, calcium-independent), pseudogene Neighboring gene predicted gene, 38689 Neighboring gene ribosomal protein L7A, pseudogene 14 Neighboring gene binder of sperm protein homolog 1

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013877.3NP_038905.1  calcium-binding protein 5

    See identical proteins and their annotated locations for NP_038905.1

    Status: PROVISIONAL

    Source sequence(s)
    AK044544
    Consensus CDS
    CCDS20831.1
    UniProtKB/Swiss-Prot
    Q9JLK3
    UniProtKB/TrEMBL
    Q543X4
    Related
    ENSMUSP00000005791, OTTMUSP00000033729, ENSMUST00000005791, OTTMUST00000067125
    Conserved Domains (2) summary
    PTZ00184
    Location:25171
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:109172
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p3 C57BL/6J

    Range
    13383295..13408880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006540043.2XP_006540106.1  

    Conserved Domains (2) summary
    PTZ00184
    Location:8154
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:92155
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

Alternate Mm_Celera

Genomic

  1. AC_000029.1 Alternate Mm_Celera

    Range
    11014860..11025491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)