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Rps6 ribosomal protein S6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 29304, updated on 8-May-2016
Official Symbol
Rps6provided by RGD
Official Full Name
ribosomal protein S6provided by RGD
Primary source
RGD:3602
See related
Ensembl:ENSRNOG00000049025
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Summary
ribosomal protein with many phosphorylated seryl residues [RGD, Feb 2006]
Location:
5q22-q23
Exon count:
5
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (105197821..105200681, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (109184689..109187549, complement)

Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102547623 Neighboring gene DENN domain containing 4C Neighboring gene uncharacterized LOC102555797 Neighboring gene 40S ribosomal protein S6-like

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
mRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
protein kinase binding ISO
Inferred from Sequence Orthology
more info
 
structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
structural constituent of ribosome IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
G1/S transition of mitotic cell cycle ISO
Inferred from Sequence Orthology
more info
 
T cell differentiation in thymus ISO
Inferred from Sequence Orthology
more info
 
T cell proliferation involved in immune response ISO
Inferred from Sequence Orthology
more info
 
TOR signaling ISO
Inferred from Sequence Orthology
more info
 
activation-induced cell death of T cells ISO
Inferred from Sequence Orthology
more info
 
cellular response to ethanol IDA
Inferred from Direct Assay
more info
PubMed 
erythrocyte development ISO
Inferred from Sequence Orthology
more info
 
gastrulation ISO
Inferred from Sequence Orthology
more info
 
glucose homeostasis ISS
Inferred from Sequence or Structural Similarity
more info
 
mitotic cell cycle checkpoint ISO
Inferred from Sequence Orthology
more info
 
mitotic nuclear division ISO
Inferred from Sequence Orthology
more info
 
negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
negative regulation of bicellular tight junction assembly IDA
Inferred from Direct Assay
more info
PubMed 
oogenesis stage ISO
Inferred from Sequence Orthology
more info
 
placenta development ISO
Inferred from Sequence Orthology
more info
 
positive regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
rRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
 
rRNA processing ISO
Inferred from Sequence Orthology
more info
 
response to insulin IDA
Inferred from Direct Assay
more info
PubMed 
ribosomal small subunit assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
ribosomal small subunit biogenesis ISO
Inferred from Sequence Orthology
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell body ISO
Inferred from Sequence Orthology
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytoplasmic ribonucleoprotein granule ISO
Inferred from Sequence Orthology
more info
 
cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
dendrite ISO
Inferred from Sequence Orthology
more info
 
intracellular ribonucleoprotein complex ISO
Inferred from Sequence Orthology
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 
polysome ISO
Inferred from Sequence Orthology
more info
 
ribosome IEA
Inferred from Electronic Annotation
more info
 
ribosome ISO
Inferred from Sequence Orthology
more info
 
small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_017160.1NP_058856.1  40S ribosomal protein S6

    See identical proteins and their annotated locations for NP_058856.1

    Status: PROVISIONAL

    Source sequence(s)
    M29358
    UniProtKB/Swiss-Prot
    P62755
    Related
    ENSRNOP00000067572, ENSRNOT00000073270
    Conserved Domains (1) summary
    cl00931
    Location:1215
    Ribosomal_S6e; Ribosomal protein S6e

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

    Range
    105197821..105200681 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000073.1 Alternate Rn_Celera

    Range
    101709190..101712050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)