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CFAP20 cilia and flagella associated protein 20 [ Homo sapiens (human) ]

Gene ID: 29105, updated on 8-May-2016
Official Symbol
CFAP20provided by HGNC
Official Full Name
cilia and flagella associated protein 20provided by HGNC
Primary source
HGNC:HGNC:29523
See related
Ensembl:ENSG00000070761 HPRD:13616; Vega:OTTHUMG00000133490
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GTL3; EVORF; fSAP23; C16orf80
Orthologs
Location:
16q21
Exon count:
6
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 16 NC_000016.10 (58113592..58129392, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (58147496..58163296, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 15 Neighboring gene TIMELESS interacting protein pseudogene Neighboring gene uncharacterized LOC101927556 Neighboring gene casein kinase 2 alpha 2 Neighboring gene coiled-coil domain containing 113 Neighboring gene uncharacterized LOC105371293

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
poly(A) RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
cilium morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development TAS
Traceable Author Statement
more info
PubMed 
positive regulation of cell motility IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of feeding behavior IDA
Inferred from Direct Assay
more info
PubMed 
protein polyglutamylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of cilium beat frequency involved in ciliary motility IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
centriole IDA
Inferred from Direct Assay
more info
PubMed 
ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
cilium IDA
Inferred from Direct Assay
more info
PubMed 
extracellular exosome IDA
Inferred from Direct Assay
more info
PubMed 
microtubule IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
Preferred Names
cilia- and flagella-associated protein 20
Names
UPF0468 protein C16orf80
basal body up-regulated protein 22
flagellar associated protein 20 homolog
functional spliceosome-associated protein 23
gene trap locus 3
transcription factor IIB

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013242.2NP_037374.1  cilia- and flagella-associated protein 20

    See identical proteins and their annotated locations for NP_037374.1

    Status: VALIDATED

    Source sequence(s)
    AV751497, BC005152
    Consensus CDS
    CCDS10793.1
    UniProtKB/Swiss-Prot
    Q9Y6A4
    Related
    ENSP00000262498, OTTHUMP00000164726, ENST00000262498, OTTHUMT00000257388
    Conserved Domains (1) summary
    pfam05018
    Location:1190
    DUF667; Protein of unknown function (DUF667)

RNA

  1. NR_136632.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026771, AI379428, BU730963, CN364433, HY042096

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p2 Primary Assembly

    Range
    58113592..58129392 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018927.2 Alternate CHM1_1.1

    Range
    59554542..59570329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)