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C19h19orf53 similar to human chromosome 19 open reading frame 53 [ Rattus norvegicus (Norway rat) ]

Gene ID: 288913, updated on 14-Apr-2024

Summary

Official Symbol
C19h19orf53provided by RGD
Official Full Name
similar to human chromosome 19 open reading frame 53provided by RGD
Primary source
RGD:735128
See related
Ensembl:ENSRNOG00000049931 AllianceGenome:RGD:735128
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human C19orf53 (chromosome 19 open reading frame 53). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: suggests misassembly
Expression
Biased expression in Heart (RPKM 434.0), Kidney (RPKM 427.5) and 9 other tissues See more
Orthologs
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Genomic context

Location:
19q11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (40819830..40822609)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (23914965..23919149)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (25355815..25358594, complement)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene ribonucleotide reductase regulatory subunit M2 like 1 Neighboring gene YJU2 splicing factor homolog B Neighboring gene methylthioribose-1-phosphate isomerase 1 Neighboring gene zinc finger, SWIM-type containing 4 Neighboring gene microRNA 24-2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
leydig cell tumor 10 kDa protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198728.2NP_942023.2  leydig cell tumor 10 kDa protein

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000019
    Related
    ENSRNOP00000066410.2, ENSRNOT00000072494.3

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    40819830..40822609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)