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Cnot6 CCR4-NOT transcription complex, subunit 6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 287249, updated on 17-May-2016
Official Symbol
Cnot6provided by RGD
Official Full Name
CCR4-NOT transcription complex, subunit 6provided by RGD
Primary source
RGD:1310783
See related
Ensembl:ENSRNOG00000054891
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
CCR4; RGD1310783
Orthologs
Location:
10q22
Exon count:
14
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (35146330..35195126, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 10 NC_005109.3 (34916148..34967236, complement)

Chromosome 10 - NC_005109.4Genomic Context describing neighboring genes Neighboring gene fms-related tyrosine kinase 4 Neighboring gene secretoglobin, family 3A, member 1 Neighboring gene 60S ribosomal protein L29-like Neighboring gene glutamine-fructose-6-phosphate transaminase 2

  • RNA degradation, organism-specific biosystem (from KEGG)
    RNA degradation, organism-specific biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
  • RNA degradation, conserved biosystem (from KEGG)
    RNA degradation, conserved biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
exoribonuclease activity ISO
Inferred from Sequence Orthology
more info
 
exoribonuclease activity ISS
Inferred from Sequence or Structural Similarity
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
molecular_function ND
No biological Data available
more info
 
poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 
poly(A)-specific ribonuclease activity ISO
Inferred from Sequence Orthology
more info
 
poly(A)-specific ribonuclease activity ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
RNA phosphodiester bond hydrolysis, exonucleolytic IEA
Inferred from Electronic Annotation
more info
 
biological_process ND
No biological Data available
more info
 
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay IEA
Inferred from Electronic Annotation
more info
 
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay ISO
Inferred from Sequence Orthology
more info
 
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay ISS
Inferred from Sequence or Structural Similarity
more info
 
gene silencing by RNA IEA
Inferred from Electronic Annotation
more info
 
nuclear-transcribed mRNA catabolic process, no-go decay IEA
Inferred from Electronic Annotation
more info
 
nuclear-transcribed mRNA catabolic process, no-go decay ISO
Inferred from Sequence Orthology
more info
 
nuclear-transcribed mRNA catabolic process, no-go decay ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of cell proliferation IEA
Inferred from Electronic Annotation
more info
 
positive regulation of cell proliferation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cytoplasmic mRNA processing body assembly IEA
Inferred from Electronic Annotation
more info
 
positive regulation of cytoplasmic mRNA processing body assembly ISO
Inferred from Sequence Orthology
more info
 
positive regulation of ligand-dependent nuclear receptor transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 
positive regulation of ligand-dependent nuclear receptor transcription coactivator activity ISO
Inferred from Sequence Orthology
more info
 
positive regulation of ligand-dependent nuclear receptor transcription coactivator activity ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
regulation of translation IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 
CCR4-NOT complex ISO
Inferred from Sequence Orthology
more info
 
CCR4-NOT complex ISS
Inferred from Sequence or Structural Similarity
more info
 
cellular_component ND
No biological Data available
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
CCR4-NOT transcription complex subunit 6
Names
carbon catabolite repressor protein 4 homolog
cytoplasmic deadenylase
NP_001013878.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013856.1NP_001013878.1  CCR4-NOT transcription complex subunit 6

    See identical proteins and their annotated locations for NP_001013878.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079308
    UniProtKB/Swiss-Prot
    Q6AXU9
    Related
    ENSRNOP00000074431, ENSRNOT00000084509
    Conserved Domains (4) summary
    cd10313
    Location:191540
    Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
    pfam12799
    Location:74110
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:51109
    LRR_8; Leucine rich repeat
    sd00031
    Location:5375
    LRR_1; leucine-rich repeat [structural motif]

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

    Range
    35146330..35195126 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000078.1 Alternate Rn_Celera

    Range
    33337338..33387801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)