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ANIA_04493 histone deacetylase RPD3 [ Aspergillus nidulans FGSC A4 ]

Gene ID: 2872294, updated on 15-Feb-2024

Summary

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Gene symbol
ANIA_04493
Gene description
histone deacetylase RPD3
Locus tag
ANIA_04493
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus nidulans FGSC A4 (strain: FGSC A4)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Nidulantes
Old locus tag
AN4493.4; AN4493.2
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Genomic context

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Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_066259.1 (1867500..1869978, complement)

Chromosome III - NC_066259.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066259.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel motif in fungal class 1 histone deacetylases is essential for growth and development of Aspergillus. Tribus M, et al. Mol Biol Cell, 2010 Jan 15. PMID 19940017, Free PMC Article
  2. Histone deacetylases in fungi: novel members, new facts. Trojer P, et al. Nucleic Acids Res, 2003 Jul 15. PMID 12853613, Free PMC Article
  3. Characterization of two putative histone deacetylase genes from Aspergillus nidulans. Graessle S, et al. Biochim Biophys Acta, 2000 Jun 21. PMID 11004483
  4. The 2008 update of the Aspergillus nidulans genome annotation: a community effort. Wortman JR, et al. Fungal Genet Biol, 2009 Mar. PMID 19146970, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by AspGD

Function Evidence Code Pubs
enables histone deacetylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables histone deacetylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
  
enables histone deacetylase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables histone deacetylase activity ISA
Inferred from Sequence Alignment
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
  
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
  
part_of Rpd3L-Expanded complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Rpd3L-Expanded complex IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
histone deacetylase RPD3
XP_662097.1
  • transcript_id=CADANIAT00005952

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_066259.1 Reference assembly

    Range
    1867500..1869978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_657005.2 → XP_662097.1  TPA: histone deacetylase RPD3 [Aspergillus nidulans FGSC A4]

    See identical proteins and their annotated locations for XP_662097.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C8V8E1, G5EB64, Q5B4N7, Q9P4F5
    Conserved Domains (3) summary
    cd10004
    Location:26 → 399
    RPD3-like; reduced potassium dependency-3 (RPD3)-like
    PTZ00063
    Location:26 → 424
    PTZ00063; histone deacetylase; Provisional
    pfam02063
    Location:441 → 687
    MARCKS; MARCKS family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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