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Chmp3 charged multivesicular body protein 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 282834, updated on 26-May-2016
Official Symbol
Chmp3provided by RGD
Official Full Name
charged multivesicular body protein 3provided by RGD
Primary source
RGD:708556
See related
Ensembl:ENSRNOG00000007356
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
Vps24
Summary
binds phosphatidylinositol 3,5- and phosphatidylinositol-4,5-bisphosphates; involved in endosome homeostasis [RGD, Feb 2006]
Orthologs
Location:
4q33
Exon count:
7
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (99449213..99496156)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 4 NC_005103.3 (164228516..164275602)

Chromosome 4 - NC_005103.4Genomic Context describing neighboring genes Neighboring gene required for meiotic nuclear division 5 homolog A Neighboring gene uncharacterized LOC100909974 Neighboring gene ring finger protein 103 Neighboring gene lysine demethylase 3A Neighboring gene receptor accessory protein 1

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
phosphatidylcholine binding ISO
Inferred from Sequence Orthology
more info
 
phosphatidylinositol-4,5-bisphosphate binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
ubiquitin-specific protease binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
cell division IEA
Inferred from Electronic Annotation
more info
 
cell separation after cytokinesis ISO
Inferred from Sequence Orthology
more info
 
endosome to lysosome transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
NOT mitotic metaphase plate congression ISO
Inferred from Sequence Orthology
more info
 
negative regulation of viral release from host cell ISO
Inferred from Sequence Orthology
more info
 
NOT nucleus organization ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cytokinesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of viral release from host cell ISO
Inferred from Sequence Orthology
more info
 
protein heterooligomerization ISO
Inferred from Sequence Orthology
more info
 
protein polymerization ISO
Inferred from Sequence Orthology
more info
 
protein transport IEA
Inferred from Electronic Annotation
more info
 
regulation of centrosome duplication ISO
Inferred from Sequence Orthology
more info
 
regulation of endosome size IMP
Inferred from Mutant Phenotype
more info
PubMed 
NOT regulation of exosomal secretion ISO
Inferred from Sequence Orthology
more info
 
NOT regulation of mitotic spindle assembly ISO
Inferred from Sequence Orthology
more info
 
regulation of viral process ISO
Inferred from Sequence Orthology
more info
 
viral budding via host ESCRT complex ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
ESCRT III complex IC
Inferred by Curator
more info
PubMed 
ESCRT III complex ISO
Inferred from Sequence Orthology
more info
 
cytoplasmic, membrane-bounded vesicle ISO
Inferred from Sequence Orthology
more info
 
cytosol IEA
Inferred from Electronic Annotation
more info
 
early endosome IDA
Inferred from Direct Assay
more info
PubMed 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
late endosome IDA
Inferred from Direct Assay
more info
PubMed 
late endosome membrane IEA
Inferred from Electronic Annotation
more info
 
midbody IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
charged multivesicular body protein 3
Names
Vps24p protein
chromatin-modifying protein 3
rVps24p
vacuolar protein sorting 24 homolog
vacuolar protein sorting-associated protein 24
vacuolar protein-sorting-associated protein 24

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172331.1NP_758834.1  charged multivesicular body protein 3

    See identical proteins and their annotated locations for NP_758834.1

    Status: PROVISIONAL

    Source sequence(s)
    AY150169
    UniProtKB/Swiss-Prot
    Q8CGS4
    Related
    ENSRNOP00000010253, ENSRNOT00000010253
    Conserved Domains (1) summary
    pfam03357
    Location:18182
    Snf7; Snf7

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005103.4 Reference Rnor_6.0 Primary Assembly

    Range
    99449213..99496156
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006236631.2XP_006236693.1  

    Conserved Domains (1) summary
    pfam03357
    Location:1156
    Snf7; Snf7

Alternate Rn_Celera

Genomic

  1. AC_000072.1 Alternate Rn_Celera

    Range
    92735412..92780550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)