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    potC spermidine/putrescine ABC transporter permease [ Candidatus Protochlamydia amoebophila UWE25 ]

    Gene ID: 2780325, updated on 18-May-2013
    Gene symbol
    potC
    Gene description
    spermidine/putrescine ABC transporter permease
    Locus tag
    pc0873
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Candidatus Protochlamydia amoebophila UWE25 (strain: UWE25, old-name: Parachlamydia sp. UWE25)
    Lineage
    Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Candidatus Protochlamydia
    Sequence :
    NC_005861.1 (1055627..1056394)

    NC_005861.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene sperimidine/putrescine ABC transporter ATP-binding protein Neighboring gene spermidine/putrescine ABC transporter permease Neighboring gene spermidine/putrescine-binding protein , component of ABC transporter system Neighboring gene hypothetical protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Illuminating the evolutionary history of chlamydiae. Horn M, et al. Science, 2004 Apr 30. PMID 15073324.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    • ABC transporters, organism-specific biosystem (from KEGG)
      ABC transporters, organism-specific biosystemThe ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of ...
    • ABC transporters, conserved biosystem (from KEGG)
      ABC transporters, conserved biosystemThe ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of ...
    • Spermidine/putrescine transport system, organism-specific biosystem (from KEGG)
      Spermidine/putrescine transport system, organism-specific biosystemStructural complex; Environmental information processing; Mineral and organic ion transport system
    Names
    spermidine/putrescine ABC transporter permease
    YP_007872.1
    • strongly similar to spermidine/putrescine transport system permease, component of ATP-transporter system

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_005861.1

      Range
      1055627..1056394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_007872.1 spermidine/putrescine ABC transporter permease [Candidatus Protochlamydia amoebophila UWE25]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q6MCV2
      Conserved Domains (2) summary
      cd06261
      Location:60 – 245
      Blast Score: 135
      TM_PBP2; Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and ...
      COG1177
      Location:1 – 253
      Blast Score: 558
      PotC; ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version
    genomic BX908798.1 CAF23597.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6MCV2.1 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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