Format

Send to:

Choose Destination

Abcf2 ATP-binding cassette, sub-family F (GCN20), member 2 [ Mus musculus (house mouse) ]

Gene ID: 27407, updated on 8-May-2016
Official Symbol
Abcf2provided by MGI
Official Full Name
ATP-binding cassette, sub-family F (GCN20), member 2provided by MGI
Primary source
MGI:MGI:1351657
See related
Ensembl:ENSMUSG00000028953 Vega:OTTMUSG00000053669
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Drr3; E430001O06; 0710005O05Rik
Orthologs
Location:
5; 5 A3
Exon count:
15
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 5 NC_000071.6 (24565341..24577467, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (24071159..24083285, complement)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box-containing 10 Neighboring gene RIKEN cDNA 4931409K22 gene Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene Neighboring gene chondroitin polymerizing factor 2 Neighboring gene microRNA 671

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATPase activity IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
membrane ISO
Inferred from Sequence Orthology
more info
 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
ATP-binding cassette sub-family F member 2
Names
abcf2
developmentally regulated repeat element-containing transcript 3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190443.1NP_001177372.1  ATP-binding cassette sub-family F member 2 isoform 2

    See identical proteins and their annotated locations for NP_001177372.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
    Source sequence(s)
    AK147937, AK151545, BY731788, BY790180
    UniProtKB/Swiss-Prot
    Q99LE6
    Conserved Domains (3) summary
    cd03221
    Location:90306
    ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
    COG0488
    Location:87607
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
    pfam12848
    Location:300370
    ABC_tran_2; ABC transporter
  2. NM_013853.2NP_038881.1  ATP-binding cassette sub-family F member 2 isoform 1

    See identical proteins and their annotated locations for NP_038881.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK147937, AK151545, BY731788
    Consensus CDS
    CCDS19125.1
    UniProtKB/Swiss-Prot
    Q99LE6
    Related
    ENSMUSP00000030795, OTTMUSP00000071015, ENSMUST00000030795, OTTMUST00000133678
    Conserved Domains (3) summary
    cd03221
    Location:91307
    ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
    COG0488
    Location:88608
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
    pfam12848
    Location:301371
    ABC_tran_2; ABC transporter

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p3 C57BL/6J

    Range
    24565341..24577467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006535726.2XP_006535789.1  

    See identical proteins and their annotated locations for XP_006535789.1

    UniProtKB/Swiss-Prot
    Q99LE6
    Conserved Domains (3) summary
    cd03221
    Location:91307
    ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
    COG0488
    Location:88608
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
    pfam12848
    Location:301371
    ABC_tran_2; ABC transporter
  2. XM_006535727.2XP_006535790.1  

    See identical proteins and their annotated locations for XP_006535790.1

    UniProtKB/Swiss-Prot
    Q99LE6
    Conserved Domains (3) summary
    cd03221
    Location:91307
    ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
    COG0488
    Location:88608
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
    pfam12848
    Location:301371
    ABC_tran_2; ABC transporter

Alternate Mm_Celera

Genomic

  1. AC_000027.1 Alternate Mm_Celera

    Range
    21515426..21527556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)