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Mrpl39 mitochondrial ribosomal protein L39 [ Mus musculus (house mouse) ]

Gene ID: 27393, updated on 28-May-2016
Official Symbol
Mrpl39provided by MGI
Official Full Name
mitochondrial ribosomal protein L39provided by MGI
Primary source
MGI:MGI:1351620
See related
Ensembl:ENSMUSG00000022889 Vega:OTTMUSG00000023651
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ORF22; Rpml5; MRP-L5; C21orf8
Orthologs
Location:
16; 16 C3.3
Exon count:
10
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 16 NC_000082.6 (84717580..84735302, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (84718526..84735426, complement)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930529L06 gene Neighboring gene microRNA 155 Neighboring gene predicted gene, 32202 Neighboring gene junction adhesion molecule 2

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
ligase activity, forming aminoacyl-tRNA and related compounds IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
structural constituent of ribosome ISA
Inferred from Sequence Alignment
more info
PubMed 
Process Evidence Code Pubs
mitochondrial genome maintenance TAS
Traceable Author Statement
more info
PubMed 
tRNA aminoacylation for protein translation IBA
Inferred from Biological aspect of Ancestor
more info
 
translation ISA
Inferred from Sequence Alignment
more info
PubMed 
Component Evidence Code Pubs
intracellular ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
mitochondrial large ribosomal subunit ISA
Inferred from Sequence Alignment
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
ribosome IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
39S ribosomal protein L39, mitochondrial
Names
L39mt
MRP-L39
ribosomal protein, mitochondrial, L5

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_017404.4NP_059100.3  39S ribosomal protein L39, mitochondrial

    See identical proteins and their annotated locations for NP_059100.3

    Status: VALIDATED

    Source sequence(s)
    AK007681, CT027693
    Consensus CDS
    CCDS57035.1
    UniProtKB/Swiss-Prot
    Q9JKF7
    Related
    ENSMUSP00000112283, OTTMUSP00000027870, ENSMUST00000116584, OTTMUST00000057713
    Conserved Domains (1) summary
    cd01667
    Location:73127
    TGS_ThrRS_N; TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p3 C57BL/6J

    Range
    84717580..84735302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000038.1 Alternate Mm_Celera

    Range
    84921589..84939358 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)