These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_012918.1 RefSeqGene
- Range
- 5001..16587
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001164803.1 → NP_001158275.1 RNA-binding motif protein, X chromosome isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks several alternate exon and contains a different 3' end, compared to variant 1. The resulting protein (isoform 2) is shorter and has a distinct C-terminus when it is compared to variant 1.
- Source sequence(s)
-
AK304868, BM147410, BX647131, DC337568
- Consensus CDS
-
CCDS55510.1
- Related
- ENSP00000411989, OTTHUMP00000024133, ENST00000431446, OTTHUMT00000058509
- Conserved Domains (1) summary
-
- cd00590
Location:9 – 74
Blast Score: 199
- RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
-
NM_002139.3 → NP_002130.2 RNA-binding motif protein, X chromosome isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the more frequently occurring transcript and it encodes the longer protein (isoform 1).
- Source sequence(s)
-
BC007435, BM147410, BM993214, DC337568
- Consensus CDS
-
CCDS14661.1
- UniProtKB/Swiss-Prot
-
P38159
- Related
- ENSP00000359645, OTTHUMP00000024132, ENST00000320676, OTTHUMT00000058507
- Conserved Domains (2) summary
-
- cd00590
Location:9 – 82
Blast Score: 247
- RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
- pfam08081
Location:173 – 217
Blast Score: 144
- RBM1CTR; RBM1CTR (NUC064) family
RNA
-
NR_028476.1 RNA Sequence
- Description
- Transcript Variant: This variant (3) lacks an alternate internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK091520, BM147410, BM993214, DA925805
-
NR_028477.1 RNA Sequence
- Description
- Transcript Variant: This variant (4) uses an alternate splice site in the 5' coding region, compared to variant 1. This variant is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with translation of the longest ORF; translation of the upstream ORF renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK096015, AK304573, BM147410, BM993214, DC337568
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000023.10 Reference GRCh37.p5 Primary Assembly
- Range
- 135951353..135962939, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000155.1 Alternate HuRef
- Range
- 125221196..125232578, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)