RefSeqs maintained independently of Annotated Genomes
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_014462.2 → NP_055277.1 U6 snRNA-associated Sm-like protein LSm1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and is protein-coding.
- Source sequence(s)
-
AJ238094, BE670269, BP376421, BU941962
- Consensus CDS
-
CCDS6103.1
- UniProtKB/Swiss-Prot
-
O15116
- Related
- ENSP00000310596, OTTHUMP00000225703, ENST00000311351, OTTHUMT00000376965
- Conserved Domains (2) summary
-
- cd01728
Location:4 – 77
Blast Score: 334
- LSm1; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of ...
- PRK10788
Location:82 – 131
Blast Score: 89
- PRK10788; periplasmic folding chaperone; Provisional
RNA
-
NR_045492.1 RNA Sequence
- Description
- Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region found in variant 1.
- Source sequence(s)
-
BE670269, BP376421, BU521199, BU941962
-
NR_045493.1 RNA Sequence
- Description
- Transcript Variant: This variant (3) uses an alternate splice site in the 5' region, compared to variant 1. This variant is represented as non-coding because it lacks an in-frame coding region, compared to variant 1.
- Source sequence(s)
-
AF147348, BE670269, BU941962
RefSeqs of Annotated Genomes: Build 37.3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000008.10 Reference GRCh37.p5 Primary Assembly
- Range
- 38020857..38034026, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000140.1 Alternate HuRef
- Range
- 36555774..36568414, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)