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Syn3 synapsin III [ Mus musculus (house mouse) ]

Gene ID: 27204, updated on 30-May-2016
Official Symbol
Syn3provided by MGI
Official Full Name
synapsin IIIprovided by MGI
Primary source
MGI:MGI:1351334
See related
Ensembl:ENSMUSG00000059602 Vega:OTTMUSG00000028681
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
Location:
10; 10 C2
Exon count:
23
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 10 NC_000076.6 (86048746..86499019, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (85511491..85961641, complement)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene BPI fold containing family C Neighboring gene F-box protein 7 Neighboring gene RIKEN cDNA 4930486F22 gene Neighboring gene predicted gene, 35636 Neighboring gene tissue inhibitor of metalloproteinase 3 Neighboring gene predicted gene 6729 Neighboring gene transcriptional adaptor 2B pseudogene Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC130403

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ATP binding ISO
Inferred from Sequence Orthology
more info
 
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
neurotransmitter secretion IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell junction IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
neuronal postsynaptic density IDA
Inferred from Direct Assay
more info
PubMed 
synapse IDA
Inferred from Direct Assay
more info
PubMed 
synaptic vesicle ISO
Inferred from Sequence Orthology
more info
 
synaptic vesicle membrane IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
synapsin-3
Names
synapsin 3
synapsin IIIa

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164495.1NP_001157967.1  synapsin-3 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding region, compared to variant 1. The encoded isoform (2) is shorter and has a unique C-terminus, compared to isoform 1.
    Source sequence(s)
    AC125060, AK043854, AK084032
    Consensus CDS
    CCDS48659.1
    UniProtKB/TrEMBL
    D3Z620
    Related
    ENSMUSP00000113408, OTTMUSP00000036314, ENSMUST00000121789, OTTMUST00000071044
    Conserved Domains (3) summary
    pfam02078
    Location:87190
    Synapsin; Synapsin, N-terminal domain
    pfam10581
    Location:129
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:192236
    ATP-grasp_4; ATP-grasp domain
  2. NM_013722.3NP_038750.2  synapsin-3 isoform 1

    See identical proteins and their annotated locations for NP_038750.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC122919, AK043854, AK080557, BC059894, BC107397
    Consensus CDS
    CCDS24096.1
    UniProtKB/Swiss-Prot
    Q8JZP2
    UniProtKB/TrEMBL
    Q3KN99
    Related
    ENSMUSP00000113720, OTTMUSP00000036313, ENSMUST00000120638, OTTMUST00000071040
    Conserved Domains (4) summary
    pfam02078
    Location:87190
    Synapsin; Synapsin, N-terminal domain
    pfam02750
    Location:192394
    Synapsin_C; Synapsin, ATP binding domain
    pfam10581
    Location:129
    Synapsin_N; Synapsin N-terminal
    pfam00242
    Location:450556
    DNA_pol_viral_N; DNA polymerase (viral) N-terminal domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000076.6 Reference GRCm38.p3 C57BL/6J

    Range
    86048746..86499019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006513699.2XP_006513762.1  

    See identical proteins and their annotated locations for XP_006513762.1

    UniProtKB/Swiss-Prot
    Q8JZP2
    Conserved Domains (4) summary
    pfam02078
    Location:87190
    Synapsin; Synapsin, N-terminal domain
    pfam02750
    Location:192394
    Synapsin_C; Synapsin, ATP binding domain
    pfam10581
    Location:129
    Synapsin_N; Synapsin N-terminal
    pfam00242
    Location:450556
    DNA_pol_viral_N; DNA polymerase (viral) N-terminal domain
  2. XM_006513698.2XP_006513761.1  

    See identical proteins and their annotated locations for XP_006513761.1

    UniProtKB/Swiss-Prot
    Q8JZP2
    Conserved Domains (4) summary
    pfam02078
    Location:87190
    Synapsin; Synapsin, N-terminal domain
    pfam02750
    Location:192394
    Synapsin_C; Synapsin, ATP binding domain
    pfam10581
    Location:129
    Synapsin_N; Synapsin N-terminal
    pfam00242
    Location:450556
    DNA_pol_viral_N; DNA polymerase (viral) N-terminal domain
  3. XM_006513700.2XP_006513763.1  

    See identical proteins and their annotated locations for XP_006513763.1

    UniProtKB/Swiss-Prot
    Q8JZP2
    Conserved Domains (4) summary
    pfam02078
    Location:87190
    Synapsin; Synapsin, N-terminal domain
    pfam02750
    Location:192394
    Synapsin_C; Synapsin, ATP binding domain
    pfam10581
    Location:129
    Synapsin_N; Synapsin N-terminal
    pfam00242
    Location:450556
    DNA_pol_viral_N; DNA polymerase (viral) N-terminal domain
  4. XM_011243460.1XP_011241762.1  

    Conserved Domains (2) summary
    pfam00242
    Location:196302
    DNA_pol_viral_N; DNA polymerase (viral) N-terminal domain
    cl17255
    Location:1140
    ATP-grasp_4; ATP-grasp domain
  5. XM_011243459.1XP_011241761.1  

    Conserved Domains (3) summary
    pfam02078
    Location:87190
    Synapsin; Synapsin, N-terminal domain
    pfam10581
    Location:129
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:192307
    ATP-grasp_4; ATP-grasp domain
  6. XM_011243461.1XP_011241763.1  

    Conserved Domains (3) summary
    pfam02078
    Location:87190
    Synapsin; Synapsin, N-terminal domain
    pfam10581
    Location:129
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:192257
    ATP-grasp_4; ATP-grasp domain
  7. XM_006513702.2XP_006513765.1  

    Conserved Domains (3) summary
    pfam02078
    Location:87190
    Synapsin; Synapsin, N-terminal domain
    pfam10581
    Location:129
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:192236
    ATP-grasp_4; ATP-grasp domain
  8. XM_011243462.1XP_011241764.1  

    Conserved Domains (3) summary
    pfam02078
    Location:87190
    Synapsin; Synapsin, N-terminal domain
    pfam10581
    Location:129
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:192236
    ATP-grasp_4; ATP-grasp domain
  9. XM_006513701.2XP_006513764.1  

    Conserved Domains (3) summary
    pfam02078
    Location:87190
    Synapsin; Synapsin, N-terminal domain
    pfam10581
    Location:129
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:192236
    ATP-grasp_4; ATP-grasp domain
  10. XM_006513704.2XP_006513767.1  

    Conserved Domains (3) summary
    pfam02078
    Location:87190
    Synapsin; Synapsin, N-terminal domain
    pfam10581
    Location:129
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:192237
    ATP-grasp_4; ATP-grasp domain

Alternate Mm_Celera

Genomic

  1. AC_000032.1 Alternate Mm_Celera

    Range
    88022524..88480347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)