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    GFAP glial fibrillary acidic protein [ Homo sapiens (human) ]

    Gene ID: 2670, updated on 9-Jun-2013
    Official Symbol
    GFAPprovided by HGNC
    Official Full Name
    glial fibrillary acidic proteinprovided by HGNC
    Primary source
    HGNC:4235
    See related
    Ensembl:ENSG00000131095; HPRD:00675; MIM:137780; Vega:OTTHUMG00000179866
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This gene encodes one of the major intermediate filament proteins of mature astrocytes. It is used as a marker to distinguish astrocytes from other glial cells during development. Mutations in this gene cause Alexander disease, a rare disorder of astrocytes in the central nervous system. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Oct 2008]
    Location :
    17q21
    Sequence :
    Chromosome: 17; NC_000017.10 (42982994..42992920, complement)
    See GFAP in Epigenomics, MapViewer

    Chromosome 17 - NC_000017.10Genomic Context describing neighboring genes Neighboring gene HIG1 hypoxia inducible domain family, member 1B Neighboring gene elongation factor Tu GTP binding domain containing 2 Neighboring gene coiled-coil domain containing 103 Neighboring gene kinesin family member 18B Neighboring gene complement component 1, q subcomponent-like 1

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Alexander's disease

    Summary from GeneReviews: Alexander Disease Go to GeneReviews

    Disease Characteristics
    Alexander disease is a disorder of cortical white matter that predominantly affects infants and children and usually results in death within ten years after onset. The infantile form comprises about 51% of affected individuals, the juvenile form about 23%, and the adult form about 24%. A neonatal form is also recognized. The neonatal form leads to severe disability or death within two years. Characteristics include seizures, hydrocephalus, severe motor and intellectual disability, severe white-matter abnormalities, involvement of the basal ganglia and cerebellum, and elevated CSF protein concentration. The infantile form presents in the first two years of life, typically with progressive psychomotor retardation with loss of developmental milestones, megalencephaly and frontal bossing, seizures, hyperreflexia and pyramidal signs, ataxia, and hydrocephalus secondary to aqueductal stenosis. Affected children survive weeks to several years. The juvenile form usually presents between ages four and ten years, occasionally in the mid-teens. Findings can include bulbar/pseudobulbar signs, ataxia, gradual loss of intellectual function, seizures, megalencephaly, and breathing problems. Survival ranges from the early teens to the 20s-30s. The adult form is the most variable.
    Diagnosis Testing
    Diagnosis of Alexander disease is based on MRI findings. Prior to the availability of molecular genetic testing the diagnosis was confirmed by the detection of astrocytic inclusion bodies (Rosenthal fibers) on brain histology. GFAP, which encodes glial fibrillary acidic protein, is the only gene in which mutation is currently known to cause Alexander disease.
    Genetic Counseling
    Alexander disease is inherited in an autosomal dominant manner. The risk to the sibs of the proband depends on the genetic status of the proband's parents. If a parent is affected or has a mutation in GFAP, the risk to the sibs of inheriting the GFAP mutation is 50%. Sibs of a proband with unaffected parents are at low risk for Alexander disease; however, the possibility of germline mosaicism exists. Prenatal testing for pregnancies at increased risk is possible if the disease-causing mutation has been identified in an affected family member.
    References
    Protein Gene Interaction Pubs
    Envelope surface glycoprotein gp120 env Ascorbate supplementation prevents the deleterious upregulation of iNOS and associated neuronal (MAP2) and astrocytic (GFAP) protein expression and structural changes caused by gp120 in human brain cell cultures PubMed
    env The phosphorylation of the two major cytoskeletal proteins, vimentin and GFAP, which is normally stimulated by isoproterenol, is partially prevented by HIV-1 gp120 in astrocytes PubMed
    env Treatment of human brain tissue with HIV-1 gp120 causes astrocyte alterations and/or death observed by decreases in the expression of glial fibrillary acidic protein (GFAP), as well as the diminution of a major protein of 66 kDa PubMed
    Nef, p27 nef HIV-1 Nef downregulates the expression of GFAP to a great extent in astrocytes than the hyperglycemia PubMed
    nef HIV-1 Nef co-localizes with the astrocyte-specific cytoskeleton protein GFAP in persistently nef-expressing human astrocytes, suggesting an interaction between Nef and GFAP may contribute to changes in morphology and activation state of astrocytes PubMed
    nef Nef upregulates the levels of glial fibrillary acidic protein (GFAP) expression in human astrocytes PubMed
    Tat, p14 tat HIV-1 Tat expression in astrocytes results in a significant increase in glial fibrillary acidic protein (GFAP) expression PubMed
    tat HIV-1 Tat-mediated upregulation of adenovirus E1a-associated 300 kDa protein p300 regulates increased GFAP expression in astrocytes PubMed
    pol gag-pol HIV-1 protease cleaves the intermediate filament proteins vimentin, desmin, and glial fibrillary acidic protein in vitro PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    P14136 Q9UQM7 CAMK2A    HPRD  PubMed  
    P14136 P06493 CDK1    HPRD  PubMed  
    P14136 Q8TAP6 CEP76    HPRD  PubMed  
    P14136 O75791 GRAP2    HPRD  PubMed  
    P14136 Q6ZU52 KIAA0408    HPRD  PubMed  
    P14136 O00255 MEN1    HPRD  PubMed  
    P14136 O00151 PDLIM1    HPRD  PubMed  
    P14136 Q9NR12 PDLIM7    HPRD  PubMed  
    P14136 Q5T2W1 PDZK1    HPRD  PubMed  
    P14136 Q9Y2N3 POM121    HPRD  PubMed  
    P14136 P17612 PRKACA    HPRD  PubMed  
    P14136 P17252 PRKCA    HPRD  PubMed  
    P14136 P49768 PSEN1    HPRD  PubMed  
    P14136 Q9H4K1 RIBC2    HPRD  PubMed  
    P14136 Q13464 ROCK1    HPRD  PubMed  
    P14136 P23297 S100A1    HPRD  PubMed  
    P14136 P04271 S100B    HPRD  PubMed  
    P14136 SH3 domain containing, Ysc84 like 1 SH3YL1    HPRD  PubMed  
    P14136 P12931 SRC    HPRD  PubMed  
    P14136 Gamma tubulin ring complex protein TUBGCP4    HPRD  PubMed  
    P14136 P08670 VIM    HPRD  PubMed  
    BioGRID:108938 BioGRID:106715 ALB    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108938 BioGRID:106848 APP    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108938 BioGRID:114646 AURKB    BioGRID  PubMed Biochemical Activity 
    BioGRID:108938 BioGRID:107479 CEBPA    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108938 BioGRID:123028 CEP76    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:107800 CRYAB    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108938 BioGRID:117646 FBXO25    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108938 BioGRID:114799 GRAP2    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:114593 HGS    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108938 BioGRID:200268 Htt    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108938 BioGRID:114089 IKBKG    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:115078 KIAA0408    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:110384 MEN1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:108938 BioGRID:123076 MYO15B    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:115332 PDCD6IP    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108938 BioGRID:114572 PDLIM1    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:114682 PDLIM7    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:111200 PDZK1    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:115214 POM121    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:111642 PSEN1    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:108938 BioGRID:111643 PSEN2    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:117581 RIBC2    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:117811 SH3YL1    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:112649 STAT1    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:118078 TUBGCP4    BioGRID  PubMed Two-hybrid 
    BioGRID:108938 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108938 BioGRID:115791 UBD    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108938 BioGRID:113272 VIM    BioGRID  PubMed Two-hybrid 
    • Neural Crest Differentiation, organism-specific biosystem (from WikiPathways)
      Neural Crest Differentiation, organism-specific biosystemGene regulatory network model of cranial neural crest cell (CNCC) development, adaped from PMID: 19575671. Most interactions in the model are proposed to regulate transcription of core factors involv...
    • Nuclear signaling by ERBB4, organism-specific biosystem (from REACTOME)
      Nuclear signaling by ERBB4, organism-specific biosystemBesides signaling as a transmembrane receptor, ligand activated homodimers of ERBB4 JM-A isoforms (ERBB4 JM-A CYT1 and ERBB4 JM-A CYT2) undergo proteolytic cleavage by ADAM17 (TACE) in the juxtamembr...
    • Signal Transduction, organism-specific biosystem (from REACTOME)
      Signal Transduction, organism-specific biosystemSignal transduction is a process in which extracellular signals elicit changes in cell state and activity. Transmembrane receptors sense changes in the cellular environment by binding ligands, such a...
    • Signaling by ERBB4, organism-specific biosystem (from REACTOME)
      Signaling by ERBB4, organism-specific biosystemERBB4, also known as HER4, belongs to the ERBB family of receptors, which also includes ERBB1 (EGFR i.e. HER1), ERBB2 (HER2 i.e. NEU) and ERBB3 (HER3). Similar to EGFR, ERBB4 has an extracellular lig...
    • Spinal Cord Injury, organism-specific biosystem (from WikiPathways)
      Spinal Cord Injury, organism-specific biosystemThis pathway provides an overview of cell types, therapeutic targets, drugs, new proposed targets and pathways implicated in spinal cord injury. Spinal cord injury is a complex multistep process that...

    Markers

    Homology

    Clone Names

    • FLJ42474, FLJ45472

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    integrin binding IEA
    Inferred from Electronic Annotation
    more info
     
    kinase binding IEA
    Inferred from Electronic Annotation
    more info
     
    structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    Bergmann glial cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    astrocyte development IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
     
    intermediate filament organization IEA
    Inferred from Electronic Annotation
    more info
     
    long-term synaptic potentiation IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of neuron projection development IEA
    Inferred from Electronic Annotation
    more info
     
    neuron projection regeneration IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of Schwann cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of neurotransmitter uptake IEA
    Inferred from Electronic Annotation
    more info
     
    response to wounding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cell body IEA
    Inferred from Electronic Annotation
    more info
     
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosol TAS
    Traceable Author Statement
    more info
     
    intermediate filament IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    glial fibrillary acidic protein
    Names
    glial fibrillary acidic protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008401.1 RefSeqGene

      Range
      4995..14921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001131019.2NP_001124491.1  glial fibrillary acidic protein isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs at the 3' coding region and 3' UTR, compared to variant 1, which results in a protein (isoform 2, also known as isoform epsilon) with a shorter and distinct C-terminus when compared to isoform 1.
      Source sequence(s)
      AJ306447, AK128790, BF526347, DA254392
      Consensus CDS
      CCDS45708.1
      UniProtKB/TrEMBL
      E9PAX3
      UniProtKB/Swiss-Prot
      P14136
      Related
      ENSP00000403962, OTTHUMP00000262839, ENST00000435360, OTTHUMT00000448709
      Conserved Domains (3) summary
      pfam04732
      Location:4066
      Blast Score: 85
      Filament_head; Intermediate filament head (DNA binding) region
      pfam00038
      Location:68376
      Blast Score: 911
      Filament; Intermediate filament protein
      cl11391
      Location:190285
      Blast Score: 91
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    2. NM_001242376.1NP_001229305.1  glial fibrillary acidic protein isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs at the 3' coding region and 3' UTR, compared to variant 1, which results in a protein (isoform 3, also known as isoform kappa) with a shorter and distinct C-terminus when compared to isoform 1.
      Source sequence(s)
      BC062609, BF526347, BM687259, DA254392, DA315956, DQ979832
      Consensus CDS
      CCDS59296.1
      UniProtKB/TrEMBL
      A7REI1
      UniProtKB/Swiss-Prot
      P14136
      Conserved Domains (3) summary
      pfam04732
      Location:3866
      Blast Score: 82
      Filament_head; Intermediate filament head (DNA binding) region
      pfam00038
      Location:68376
      Blast Score: 909
      Filament; Intermediate filament protein
      cl11391
      Location:190285
      Blast Score: 91
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    3. NM_002055.4NP_002046.1  glial fibrillary acidic protein isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes a predominant isoform (1, also known as alpha).
      Source sequence(s)
      AC015936, BC013596, BF341765, DA254392, J04569
      Consensus CDS
      CCDS11491.1
      UniProtKB/Swiss-Prot
      P14136
      Related
      ENSP00000253408, OTTHUMP00000262835, ENST00000253408, OTTHUMT00000448701
      Conserved Domains (3) summary
      pfam04732
      Location:4066
      Blast Score: 85
      Filament_head; Intermediate filament head (DNA binding) region
      pfam00038
      Location:68376
      Blast Score: 884
      Filament; Intermediate filament protein
      cl11391
      Location:190285
      Blast Score: 90
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000017.10 Reference GRCh37.p10 Primary Assembly

      Range
      42982994..42992920, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000149.1 Alternate HuRef

      Range
      38748049..38758000, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018928.1 Alternate CHM1_1.0

      Range
      43773595..43783521, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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