Sign in to NCBI

Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    trpC2 indole-3-glycerol phosphate synthase [ Corynebacterium diphtheriae NCTC 13129 ]

    Gene ID: 2650744, updated on 11-May-2013
    Gene symbol
    trpC2
    Gene description
    indole-3-glycerol phosphate synthase
    Locus tag
    DIP1555
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Corynebacterium diphtheriae NCTC 13129 (strain: NCTC13129)
    Lineage
    Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium
    Sequence :
    NC_002935.2 (1584186..1584998, complement)

    NC_002935.2Genomic Context describing neighboring genes Neighboring gene pyruvate kinase Neighboring gene prolipoprotein diacylglyceryl transferase Neighboring gene hypothetical protein Neighboring gene phosphoribosyl-AMP cyclohydrolase

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129. Cerdeño-Tárraga AM, et al. Nucleic Acids Res, 2003 Nov 15. PMID 14602910.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction

    Miscellaneous features

    • Loc: c1584365-1584258 ProfileScan hit to PS50264, Proteins binding FMN and related compounds (core region profile).
    • Loc: c1584983-1584225 BlastProDom hit to PD001511, PD001511~HMMPfam hit to PF00218, Indole-3-glycerol phosphate synthase
    Names
    indole-3-glycerol phosphate synthase
    NP_939897.1
    • Similar to Mycobacterium tuberculosis indole-3-glycerol phosphate synthase TrpC or Rv1611 or MT1646 or MTCY01B2.03 SW:TRPC_MYCTU (O06129) (272 aa) fasta scores: E(): 1.4e-52, 55.59% id in 268 aa, and to Streptomyces coelicolor indole-3-glycerol phosphate synthase 1 TrpC1 or TrpC or SC4G6.08c SW:TRC1_STRCO (O68814) (269 aa) fasta scores: E(): 1.1e-44, 48.28% id in 263 aa

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002935.2

      Range
      1584186..1584998, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_939897.1 indole-3-glycerol phosphate synthase [Corynebacterium diphtheriae NCTC 13129]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q6NGG3
      Conserved Domains (1) summary
      cd00331
      Location:51 – 258
      Blast Score: 572
      IGPS; Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the ...
    Nucleotide Protein
    Heading Accession and Version
    genomic BX248358.1 CAE50080.1
    genomic BX248353.1 CAE50080.1

    Gene LinkOut

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

      Related sites

      Feedback

      Subscription

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...