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    GBA glucosidase, beta, acid [ Homo sapiens ]

    Gene ID: 2629, updated on 19-May-2012

    Summary

    Official Symbol
    GBAprovided by HGNC
    Official Full Name
    glucosidase, beta, acidprovided by HGNC
    Primary source
    HGNC:4177
    See related
    Ensembl:ENSG00000177628; HPRD:06973; MIM:606463; Vega:OTTHUMG00000035841
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GCB; GBA1; GLUC
    Summary
    This gene encodes a lysosomal membrane protein that cleaves the beta-glucosidic linkage of glycosylceramide, an intermediate in glycolipid metabolism. Mutations in this gene cause Gaucher disease, a lysosomal storage disease characterized by an accumulation of glucocerebrosides. A related pseudogene is approximately 12 kb downstream of this gene on chromosome 1. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2010]

    Genomic context

    Location :
    1q21
    Sequence :
    Chromosome: 1; NC_000001.10 (155204239..155214653, complement)

    Chromosome 1 - NC_000001.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100129268 Neighboring gene thrombospondin 3 Neighboring gene metaxin 1 Neighboring gene glucosidase, beta, acid pseudogene 1 Neighboring gene metaxin 1 pseudogene 1 Neighboring gene family with sequence similarity 189, member B Neighboring gene secretory carrier membrane protein 3

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Gaucher disease, perinatal lethal

    Gaucher disease, type I

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Gaucher disease (GD) encompasses a continuum of clinical findings from a perinatal lethal disorder to an asymptomatic type. The identification of three major clinical types (1, 2, and 3) and two other subtypes (perinatal-lethal and cardiovascular) is useful in determining prognosis and management. GD type 1 is characterized by the presence of clinical or radiographic evidence of bone disease (osteopenia, focal lytic or sclerotic lesions, and osteonecrosis), hepatosplenomegaly, anemia and thrombocytopenia, lung disease, and the absence of primary central nervous system disease. GD types 2 and 3 are characterized by the presence of primary neurologic disease; in the past, they were distinguished by age of onset and rate of disease progression, but these distinctions are not absolute. Disease with onset before age two years, limited psychomotor development, and a rapidly progressive course with death by age two to four years is classified as GD type 2. Individuals with GD type 3 may have onset before age two years, but often have a more slowly progressive course and may live into the third or fourth decade. The perinatal-lethal form is associated with ichthyosiform or collodion skin abnormalities or with nonimmune hydrops fetalis. The cardiovascular form is characterized by calcification of the aortic and mitral valves, mild splenomegaly, corneal opacities, and supranuclear ophthalmoplegia. Cardiopulmonary complications have been described with all the clinical subtypes, although varying in frequency and severity.
    Diagnosis Testing
    The diagnosis of GD relies on demonstration of deficient glucosylceramidase enzyme activity in peripheral blood leukocytes or other nucleated cells. Carrier testing by assay of enzyme activity is unreliable because of overlap in enzyme activity between carriers and non-carriers. Identification of two disease-causing alleles in GBA, the only gene in which mutations are known to cause GD, provides additional confirmation of the diagnosis but should not be used for diagnosis in lieu of biochemical testing.
    Genetic Counseling
    Gaucher disease (GD) is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Targeted mutation analysis can be used to detect carriers in high-risk populations (e.g., Ashkenazi Jewish persons). Because the carrier frequency for GD in certain populations is high (e.g., 1:18 in individuals of Ashkenazi Jewish heritage) and the N370S/N370S phenotype is variable, individuals who undergo carrier testing may be identified as being homozygous. Prenatal testing for pregnancies at increased risk is possible using assay of glucosylceramidase enzymatic activity and molecular genetic testing when both disease-causing mutations in a family are known.
    References

    Gaucher disease, type II

    Gaucher disease, type III

    Gaucher disease, type IIIC

    Lewy body dementia, susceptibility to

    Parkinson disease, late-onset, susceptibility to

    HIV-1 protein interactions

    Protein Gene Interaction Pubs
    Tat tat Glucocerebrosidase fusion proteins with the HIV-1 Tat transduction domain are internalized by cells and localize to endosomes and lysosomes, suggesting a novel strategy for generating therapeutic enzymes for Gaucher disease enzyme replacement therapy PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    P04062 P07602 PSAP    HPRD  PubMed  
    BioGRID:108899 BioGRID:109552 HSP90AA1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108899 BioGRID:109540 HSPA4    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108899 BioGRID:110811 NEDD4    BioGRID  PubMed Biochemical Activity 
    BioGRID:108899 BioGRID:111105 PARK2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108899 BioGRID:112810 TCP1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108899 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-Western 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    cation binding IEA
    Inferred from Electronic Annotation
    more info
     
    glucosylceramidase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    hydrolase activity, acting on glycosyl bonds IEA
    Inferred from Electronic Annotation
    more info
     
    receptor binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    cell death IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to tumor necrosis factor IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    ceramide biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    glucosylceramide catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    glycosphingolipid metabolic process TAS
    Traceable Author Statement
    more info
     
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    lysosome organization IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of MAP kinase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of inflammatory response IC
    Inferred by Curator
    more info
    PubMed 
    negative regulation of interleukin-6 production IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of protein dephosphorylation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    sphingolipid metabolic process TAS
    Traceable Author Statement
    more info
     
    sphingosine biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    termination of signal transduction IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    lysosomal lumen ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    lysosomal membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    lysosomal membrane TAS
    Traceable Author Statement
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    glucosylceramidase
    Names
    glucosylceramidase
    alglucerase
    imiglucerase
    acid beta-glucosidase
    beta-glucocerebrosidase
    lysosomal glucocerebrosidase
    D-glucosyl-N-acylsphingosine glucohydrolase
    NP_000148.2
    NP_001005741.1
    NP_001005742.1
    NP_001165282.1
    NP_001165283.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009783.1 RefSeqGene

      Range
      4836..15250
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000157.3NP_000148.2  glucosylceramidase isoform 1 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes isoform 1. Variants 1, 2 and 3 encode the same isoform 1.
      Source sequence(s)
      AL713999, BC003356, DC297079
      Consensus CDS
      CCDS1102.1
      UniProtKB/Swiss-Prot
      P04062
      Related
      ENSP00000357357, OTTHUMP00000033992, ENST00000368373, OTTHUMT00000087203
      Conserved Domains (2) summary
      COG5520
      Location:105536
      Blast Score: 325
      COG5520; O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
      pfam02055
      Location:40533
      Blast Score: 2177
      Glyco_hydro_30; O-Glycosyl hydrolase family 30
    2. NM_001005741.2NP_001005741.1  glucosylceramidase isoform 1 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2 and 3 encode the same isoform 1.
      Source sequence(s)
      AK291911, AK300876, AL713999
      Consensus CDS
      CCDS1102.1
      UniProtKB/TrEMBL
      B7Z6S9
      UniProtKB/Swiss-Prot
      P04062
      Related
      ENSP00000314508, OTTHUMP00000033993, ENST00000327247, OTTHUMT00000087204
      Conserved Domains (2) summary
      COG5520
      Location:105536
      Blast Score: 325
      COG5520; O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
      pfam02055
      Location:40533
      Blast Score: 2177
      Glyco_hydro_30; O-Glycosyl hydrolase family 30
    3. NM_001005742.2NP_001005742.1  glucosylceramidase isoform 1 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1, 2 and 3 encode the same isoform 1.
      Source sequence(s)
      AK300876, AL713999
      Consensus CDS
      CCDS1102.1
      UniProtKB/TrEMBL
      B7Z6S9
      UniProtKB/Swiss-Prot
      P04062
      Conserved Domains (2) summary
      COG5520
      Location:105536
      Blast Score: 325
      COG5520; O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
      pfam02055
      Location:40533
      Blast Score: 2177
      Glyco_hydro_30; O-Glycosyl hydrolase family 30
    4. NM_001171811.1NP_001165282.1  glucosylceramidase isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus than isoform 1.
      Source sequence(s)
      AK300829, AK300876, AL713999
      Consensus CDS
      CCDS53373.1
      UniProtKB/TrEMBL
      B7Z6S1
      UniProtKB/TrEMBL
      B7Z6S9
      Related
      ENSP00000397986, ENST00000428024
      Conserved Domains (2) summary
      COG5520
      Location:18449
      Blast Score: 323
      COG5520; O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
      pfam02055
      Location:1446
      Blast Score: 1958
      Glyco_hydro_30; O-Glycosyl hydrolase family 30
    5. NM_001171812.1NP_001165283.1  glucosylceramidase isoform 3 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5) lacks an in-frame exon in the coding region, compared to variant 1. The encoded isoform (3) is shorter than isoform 1.
      Source sequence(s)
      AK298900, AL713999
      Consensus CDS
      CCDS53374.1
      UniProtKB/TrEMBL
      B7Z5G2
      Related
      ENSP00000402577, ENST00000427500
      Conserved Domains (1) summary
      pfam02055
      Location:40484
      Blast Score: 1903
      Glyco_hydro_30; O-Glycosyl hydrolase family 30

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000001.10 Reference GRCh37.p5 Primary Assembly

      Range
      155204239..155214653, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh37.p5 PATCHES

    Genomic

    1. NW_003315906.1 Reference GRCh37.p5 PATCHES

      Range
      39471..49885, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000133.1 Alternate HuRef

      Range
      126557467..126576952, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001005749.1: Suppressed sequence

      Description
      NM_001005749.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    2. NM_001005750.1: Suppressed sequence

      Description
      NM_001005750.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AC217785.3 (39470..40344) None
    genomic AF023268.1 AAC51820.1
    genomic AL713999.28 CAI95090.1
    genomic CH471121.2 EAW53100.1
      EAW53101.1
      EAW53102.1
      EAW53103.1
    genomic J03059.1 AAC63056.1
    genomic M18916.1 AAA35878.1
    genomic M18917.1 AAA35879.1
    genomic M20248.1 AAA35874.1
      AAA35875.1
    genomic M20282.1 AAA35876.1
    mRNA AK291911.1 BAF84600.1
    mRNA AK295259.1 BAG58248.1
    mRNA AK298900.1 BAH12898.1
    mRNA AK300186.1 BAH13232.1
    mRNA AK300829.1 BAH13357.1
    mRNA AK300876.1 BAH13365.1
    mRNA AK301374.1 BAH13467.1
    mRNA AK301879.1 BAH13574.1
    mRNA AK302000.1 BAH13605.1
    mRNA AK311242.1 None
    mRNA AK312502.1 BAG35404.1
    mRNA AL547558.3 None
    mRNA AU122729.1 None
    mRNA AU131071.1 None
    mRNA AU140959.1 None
    mRNA AU141794.1 None
    mRNA BC003356.1 AAH03356.1
    mRNA BI458641.1 None
    mRNA BX382279.2 None
    mRNA BX477204.1 None
    mRNA BX648487.1 None
    mRNA D13286.1 BAA02545.1
    mRNA DC297079.1 None
    mRNA K02920.1 AAA35877.1
    mRNA M16328.1 AAA35873.1
    mRNA M19285.1 AAA35880.1
    mRNA M22212.1 None
    Protein Accession Links
    GenPept Link UniProtKB Link
    P04062.3 GenPept UniProtKB/Swiss-Prot:P04062
    Q9UQU9 GenPept UniProtKB/TrEMBL:Q9UQU9

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