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    GATM glycine amidinotransferase (L-arginine:glycine amidinotransferase) [ Homo sapiens (human) ]

    Gene ID: 2628, updated on 15-Jun-2013
    Official Symbol
    GATMprovided by HGNC
    Official Full Name
    glycine amidinotransferase (L-arginine:glycine amidinotransferase)provided by HGNC
    Primary source
    HGNC:4175
    See related
    Ensembl:ENSG00000171766; HPRD:03838; MIM:602360; Vega:OTTHUMG00000131427
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    AT; AGAT
    Summary
    This gene encodes a mitochondrial enzyme that belongs to the amidinotransferase family. This enzyme is involved in creatine biosynthesis, whereby it catalyzes the transfer of a guanido group from L-arginine to glycine, resulting in guanidinoacetic acid, the immediate precursor of creatine. Mutations in this gene cause arginine:glycine amidinotransferase deficiency, an inborn error of creatine synthesis characterized by mental retardation, language impairment, and behavioral disorders. [provided by RefSeq, Jul 2008]
    Location :
    15q21.1
    Sequence :
    Chromosome: 15; NC_000015.9 (45653322..45670980, complement)
    See GATM in Epigenomics, MapViewer

    Chromosome 15 - NC_000015.9Genomic Context describing neighboring genes Neighboring gene hCG1793639 Neighboring gene protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene Neighboring gene GATM antisense RNA 1 Neighboring gene spermatogenesis associated 5-like 1 Neighboring gene chromosome 15 open reading frame 48 Neighboring gene microRNA 147b

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Arginine:glycine amidinotransferase deficiency

    Summary from GeneReviews: Creatine Deficiency Syndromes Go to GeneReviews

    Disease Characteristics
    The cerebral creatine deficiency syndromes (CCDS), inborn errors of creatine metabolism, include the two creatine biosynthesis disorders, guanidinoacetate methyltransferase (GAMT) deficiency and L-arginine:glycine amidinotransferase (AGAT or GATM) deficiency, and the creatine transporter (SLC6A8) deficiency. Intellectual disability and seizures are common to all three CCDS. The majority of individuals with GAMT deficiency have a behavior disorder that can include autistic behaviors and self-mutilation; a significant proportion have pyramidal/extrapyramidal findings. Onset is between ages three months and three years. Only seven individuals with AGAT deficiency have been reported. The phenotype of SLC6A8 deficiency in affected males ranges from mild intellectual disability and speech delay to severe intellectual disability, seizures, and behavior disorder; age at diagnosis ranges from two to 66 years. Females heterozygous for SLC6A8 deficiency may have learning and behavior problems.
    Diagnosis Testing
    Cerebral creatine deficiency in cranial MR spectroscopy (MRS) is the characteristic hallmark of all CCDS. Diagnosis of CCDS relies on: measurement of guanidinoacetate (GAA), creatine, and creatinine in urine and plasma; and molecular genetic testing of the three genes involved, GAMT, GATM, or SLC6A8. If molecular genetic test results are inconclusive, GAMT enzyme activity (in cultured fibroblast or lymphoblasts), GATM enzyme activity (in lymphoblasts), or creatine uptake in cultured fibroblasts can be assessed.
    Genetic Counseling
    GAMT deficiency and AGAT deficiency are inherited in an autosomal recessive manner. At conception, each sib of an individual with GAMT deficiency or AGAT deficiency has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. SLC6A8 deficiency is inherited in an X-linked manner. Mothers who are carriers have a 50% chance of transmitting the mutation in each pregnancy: sons who inherit the mutation will be affected; daughters who inherit the mutation will be carriers and may have learning and behavioral problems. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible for all three defects in creatine metabolism if the disease-causing mutation(s) in the family are known.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    P50440 P50440 GATM    HPRD  PubMed  
    BioGRID:108898 BioGRID:107944 CYP2E1    BioGRID  PubMed Two-hybrid 
    BioGRID:108898 BioGRID:211934 Gatm    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    cellular nitrogen compound metabolic process TAS
    Traceable Author Statement
    more info
     
    creatine biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    creatine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    creatine metabolic process TAS
    Traceable Author Statement
    more info
     
    embryo development IEA
    Inferred from Electronic Annotation
    more info
     
    response to mercury ion IEA
    Inferred from Electronic Annotation
    more info
     
    response to nutrient IEA
    Inferred from Electronic Annotation
    more info
     
    response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
     
    response to peptide hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    tissue regeneration IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial intermembrane space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrial intermembrane space TAS
    Traceable Author Statement
    more info
     
    Preferred Names
    glycine amidinotransferase, mitochondrial
    Names
    glycine amidinotransferase, mitochondrial
    transamidinase
    L-arginine:glycine amidinotransferase
    NP_001473.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_011674.1 RefSeqGene

      Range
      5001..22659
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001482.2NP_001473.1  glycine amidinotransferase, mitochondrial precursor

      Status: REVIEWED

      Source sequence(s)
      AC025580, BC004141, CD365153, DB457418
      Consensus CDS
      CCDS10122.1
      UniProtKB/Swiss-Prot
      P50440
      Related
      ENSP00000379895, OTTHUMP00000162120, ENST00000396659, OTTHUMT00000254220
      Conserved Domains (2) summary
      COG1834
      Location:86409
      Blast Score: 174
      COG1834; N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
      cl12043
      Location:116414
      Blast Score: 153
      Amidinotransf; Amidinotransferase

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000015.9 Reference GRCh37.p10 Primary Assembly

      Range
      45653322..45670980, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000147.1 Alternate HuRef

      Range
      22477507..22495086, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018926.1 Alternate CHM1_1.0

      Range
      25720031..25737691, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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