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    SACS spastic ataxia of Charlevoix-Saguenay (sacsin) [ Homo sapiens ]

    Gene ID: 26278, updated on 11-May-2012

    Summary

    Official Symbol
    SACSprovided by HGNC
    Official Full Name
    spastic ataxia of Charlevoix-Saguenay (sacsin)provided by HGNC
    Primary source
    HGNC:10519
    See related
    Ensembl:ENSG00000151835; HPRD:05135; MIM:604490; Vega:OTTHUMG00000016562
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ARSACS; DNAJC29; DKFZp686B15167
    Summary
    This gene encodes the sacsin protein, which includes a UbL domain at the N-terminus, a DnaJ domain, and a HEPN domain at the C-terminus. The gene is highly expressed in the central nervous system, also found in skin, skeletal muscles and at low levels in the pancreas. This gene includes a very large exon spanning more than 12.8 kb. Mutations in this gene result in autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS), a neurodegenerative disorder characterized by early-onset cerebellar ataxia with spasticity and peripheral neuropathy. The authors of a publication on the effects of siRNA-mediated sacsin knockdown concluded that sacsin protects against mutant ataxin-1 and suggest that "the large multi-domain sacsin protein is able to recruit Hsp70 chaperone action and has the potential to regulate the effects of other ataxia proteins" (Parfitt et al., PubMed: 19208651). [provided by RefSeq, Apr 2012]

    Genomic context

    Location :
    13q12
    Sequence :
    Chromosome: 13; NC_000013.10 (23902965..24007841, complement)
    See SACS in Epigenomics, MapViewer

    Chromosome 13 - NC_000013.10Genomic Context describing neighboring genes Neighboring gene sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) Neighboring gene TatD DNase domain containing 2 pseudogene 3 Neighboring gene SDA1 domain containing 1 pseudogene 4 Neighboring gene SACS antisense RNA 1 (non-protein coding) Neighboring gene long intergenic non-protein coding RNA 327 Neighboring gene tumor necrosis factor receptor superfamily, member 19

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    A genome-wide association study identifies protein quantitative trait loci (pQTLs).

    Spastic ataxia, Charlevoix-Saguenay type

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    ARSACS (autosomal recessive spastic ataxia of Charlevoix-Saguenay) is characterized in individuals born in Quebec Province by early-onset (age 12-18 months) difficulty in walking and gait unsteadiness. In individuals with ARSACS born outside the Province of Quebec, onset is often delayed until later childhood and even adulthood. Ataxia, dysarthria, spasticity, extensor plantar reflexes, distal muscle wasting, a distal sensorimotor neuropathy predominant in the legs, and horizontal gaze nystagmus constitute the most frequent progressive neurologic signs. Yellow streaks of hypermyelinated fibers radiate from the edges of the retina. The retinal changes are uncommon in individuals with ARSACS of French, Italian, Tunisian, and Turkish heritage; they are described as less extensive in persons of Japanese descent. Individuals with ARSACS born in the Province of Quebec become wheelchair bound at the average age of 41 years; cognitive skills are preserved in the long term as individuals remain able to perform daily living tasks late into adulthood. Death commonly occurs in the sixth decade.
    Diagnosis Testing
    Neuroimaging reveals atrophy of the superior vermis, with little extension into lateral cerebellar hemispheres. Dentate nuclei and pontine structures are spared. SACS is the only gene associated with ARSACS. About 96% of individuals with ARSACS from northeastern Quebec are homozygotes or compound heterozygotes for two founder mutations. Molecular genetic testing for these mutations is available on a clinical basis. Molecular genetic testing for mutations observed in other populations is available on a research basis only.
    Genetic Counseling
    ARSACS is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being neither affected nor a carrier. Once an at-risk sib is known to be unaffected, the risk of his/her being a carrier is 2/3. Prenatal testing for pregnancies at increased risk is possible if both disease-causing alleles of an affected family member have been identified.
    References

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    Q9NZJ4 O43707 ACTN4    HPRD  PubMed  
    Q9NZJ4 Q9NRD5 PICK1    HPRD  PubMed  
    Q9NZJ4 Q9Y3Q8 TSC22D4    HPRD  PubMed  
    Q9NZJ4 Q9P1U0 ZNRD1    HPRD  PubMed  
    BioGRID:117661 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    Hsp70 protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    chaperone binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    proteasome binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cell death IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of inclusion body assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein folding NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    axon TAS
    Traceable Author Statement
    more info
    PubMed 
    cell body fiber TAS
    Traceable Author Statement
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    dendrite TAS
    Traceable Author Statement
    more info
    PubMed 
    mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    sacsin
    Names
    sacsin
    dnaJ homolog subfamily C member 29

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_012342.1 RefSeqGene

      Range
      5001..109877
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_014363.4NP_055178.3  sacsin

      Status: REVIEWED

      Source sequence(s)
      AL157766, AL354815
      Consensus CDS
      CCDS9300.2
      UniProtKB/Swiss-Prot
      Q9NZJ4
      Related
      ENSP00000371735, ENST00000382298
      Conserved Domains (3) summary
      cd01769
      Location:1960
      Blast Score: 102
      UBL; Ubiquitin-like domain of UBL
      cl00824
      Location:44514567
      Blast Score: 230
      HEPN; HEPN domain
      cl02542
      Location:43224360
      Blast Score: 91
      DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000013.10 Reference GRCh37.p5 Primary Assembly

      Range
      23902965..24007841, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000145.1 Alternate HuRef

      Range
      4715594..4820279, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AF193556.1 AAF31262.1
    genomic AL157766.9 CAI13922.3
      CAI13923.3
      CAQ52598.1
      CAQ52599.1
    genomic AL157766.9 CAI13922.3
      CAI13923.3
      CAQ52598.1
      CAQ52599.1
    genomic AL354815.10 (100..18316) None
    genomic CH471075.1 EAX08323.1
    mRNA AB018273.1 BAA34450.1
    mRNA AK024708.1 None
    mRNA AK090599.1 BAC03486.1
    mRNA AK125458.1 None
    mRNA BC039418.1 None
    mRNA BX640926.1 CAE45964.1
    mRNA CR749427.1 CAH18265.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9NZJ4.2 GenPept UniProtKB/Swiss-Prot:Q9NZJ4

      Supplemental Content

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