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    TP0769 outer membrane protein (tmpB) [ Treponema pallidum subsp. pallidum str. Nichols ]

    Gene ID: 2611387, updated on 8-May-2013
    Gene symbol
    TP0769
    Gene description
    outer membrane protein (tmpB)
    Locus tag
    TP0769
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Treponema pallidum subsp. pallidum str. Nichols (strain: Nichols, sub-species: pallidum)
    Lineage
    Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema
    Sequence :
    NC_000919.1 (834956..835933)

    NC_000919.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene elongation factor G Neighboring gene membrane protein (tmpA) Neighboring gene ATP-dependent RNA helicase Neighboring gene hypothetical protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Complete genome sequence of Treponema pallidum, the syphilis spirochete. Fraser CM, et al. Science, 1998 Jul 17. PMID 9665876.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    outer membrane protein (tmpB)
    NP_219206.1
    • similar to GB:M58562 SP:P19649 PID:155065 percent identity: 100.00; identified by sequence similarity

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000919.1

      Range
      834956..835933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_219206.1 outer membrane protein (tmpB) [Treponema pallidum subsp. pallidum str. Nichols]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P19649
      Conserved Domains (1) summary
      COG1652
      Location:9 – 150
      Blast Score: 151
      XkdP; Uncharacterized protein containing LysM domain [Function unknown]
    Nucleotide Protein
    Heading Accession and Version
    genomic AE000520.1 AAC65737.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    P19649.2 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Miscellaneous

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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