RefSeqs maintained independently of Annotated Genomes
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001001560.2 → NP_001001560.1 ADP-ribosylation factor-binding protein GGA1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks 2 in-frame exons in the coding region, as compared to variant 1. The encoded isoform 2 thus lacks an internal segment, as compared to isoform 1.
- Source sequence(s)
-
AK075256, AL110219, BC044629, DA455573
- Consensus CDS
-
CCDS33643.1
- UniProtKB/TrEMBL
-
Q86YA9
- UniProtKB/Swiss-Prot
-
Q9UJY5
- Related
- ENSP00000321288, OTTHUMP00000214014, ENST00000325180, OTTHUMT00000353186
- Conserved Domains (3) summary
-
- cd03567
Location:9 – 147
Blast Score: 612
- VHS_GGA; VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to ...
- pfam03127
Location:208 – 281
Blast Score: 201
- GAT; GAT domain
- cl03759
Location:430 – 544
Blast Score: 269
- Alpha_adaptinC2; Adaptin C-terminal domain
-
NM_001001561.2 → NP_001001561.1 ADP-ribosylation factor-binding protein GGA1 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks multiple 3' exons and has an alternate 3' end, as compared to variant 1. The encoded isoform 3 has a shorter and distinct C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AK075256, AL035496, BC029388, DA455573
- Consensus CDS
-
CCDS46704.1
- UniProtKB/TrEMBL
-
Q8NCS6
- UniProtKB/Swiss-Prot
-
Q9UJY5
- Related
- ENSP00000414387, ENST00000414350
- Conserved Domains (1) summary
-
- cl02544
Location:9 – 69
Blast Score: 248
- VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...
-
NM_001172687.1 → NP_001166158.1 ADP-ribosylation factor-binding protein GGA1 isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an in-frame segment in the coding region, as compared to variant 1. The resulting isoform (4) lacks an internal segment of 4 aa, as compared to isoform 1.
- Source sequence(s)
-
AK075256, AL110219, DA455573
- UniProtKB/Swiss-Prot
-
Q9UJY5
- Conserved Domains (3) summary
-
- cd03567
Location:9 – 147
Blast Score: 618
- VHS_GGA; VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to ...
- pfam03127
Location:208 – 303
Blast Score: 288
- GAT; GAT domain
- cl03759
Location:513 – 627
Blast Score: 267
- Alpha_adaptinC2; Adaptin C-terminal domain
-
NM_001172688.1 → NP_001166159.1 ADP-ribosylation factor-binding protein GGA1 isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) has an alternate 5' sequence, which results in a downstream AUG start codon, as compared to variant 1. The resulting isoform (5) has a shorter N-terminus, as compared to isoform 1.
- Source sequence(s)
-
AK122898, AL110219
- Consensus CDS
-
CCDS54526.1
- UniProtKB/TrEMBL
-
B0QYR7
- UniProtKB/Swiss-Prot
-
Q9UJY5
- Related
- ENSP00000385287, OTTHUMP00000198162, ENST00000406772, OTTHUMT00000319455
- Conserved Domains (3) summary
-
- pfam03127
Location:135 – 230
Blast Score: 291
- GAT; GAT domain
- cl02544
Location:1 – 74
Blast Score: 353
- VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...
- cl03759
Location:444 – 558
Blast Score: 266
- Alpha_adaptinC2; Adaptin C-terminal domain
-
NM_013365.4 → NP_037497.1 ADP-ribosylation factor-binding protein GGA1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AK075256, AL110219, DA455573
- Consensus CDS
-
CCDS13951.1
- UniProtKB/Swiss-Prot
-
Q9UJY5
- Related
- ENSP00000341344, OTTHUMP00000028975, ENST00000343632, OTTHUMT00000075873
- Conserved Domains (3) summary
-
- cd03567
Location:9 – 147
Blast Score: 619
- VHS_GGA; VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to ...
- pfam03127
Location:208 – 303
Blast Score: 290
- GAT; GAT domain
- cl03759
Location:517 – 631
Blast Score: 268
- Alpha_adaptinC2; Adaptin C-terminal domain
RefSeqs of Annotated Genomes: Build 37.3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000022.10 Reference GRCh37.p5 Primary Assembly
- Range
- 38004481..38029571
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000154.1 Alternate HuRef
- Range
- 20971795..20996697
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)