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ATRNL1 attractin like 1 [ Homo sapiens (human) ]

Gene ID: 26033, updated on 26-May-2016
Official Symbol
ATRNL1provided by HGNC
Official Full Name
attractin like 1provided by HGNC
Primary source
HGNC:HGNC:29063
See related
Ensembl:ENSG00000107518 HPRD:12504; MIM:612869; Vega:OTTHUMG00000019096
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ALP; bA338L11.1; bA454H24.1
Orthologs
Location:
10q26
Exon count:
35
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 10 NC_000010.11 (115093365..115948999)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (116853124..117708496)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724589 Neighboring gene uncharacterized LOC105378496 Neighboring gene uncharacterized LOC105378497 Neighboring gene N-terminal asparagine amidase pseudogene 1 Neighboring gene GDNF family receptor alpha 1 Neighboring gene coiled-coil domain containing 172

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NHGRI GWAS Catalog

Description
Whole genome association scan for genetic polymorphisms influencing information processing speed.
NHGRI GWA Catalog
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • FLJ45344, KIAA0534

Gene Ontology Provided by GOA

Function Evidence Code Pubs
carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
G-protein coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
attractin-like protein 1
Names
attractin-like 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001276282.3NP_001263211.1  attractin-like protein 1 isoform 2 precursor

    See identical proteins and their annotated locations for NP_001263211.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has its transcription extend past a splice site that is used in variant 1 and which results in a novel 3' coding region and 3' UTR, compared to variant 1. It encodes isoform 2 which is shorter and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    BC029592, BC035157, BC139916
    Consensus CDS
    CCDS73204.1
    UniProtKB/Swiss-Prot
    Q5VV63
    UniProtKB/TrEMBL
    Q4G0Y2
    Related
    ENSP00000476902, OTTHUMP00000276902, ENST00000609571, OTTHUMT00000050508
    Conserved Domains (4) summary
    cd00041
    Location:93208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam13854
    Location:352392
    Kelch_5; Kelch motif
    cl19567
    Location:235280
    DSL; Delta serrate ligand
    sd00038
    Location:305352
    Kelch; KELCH repeat [structural motif]
  2. NM_207303.4NP_997186.1  attractin-like protein 1 isoform 1 precursor

    See identical proteins and their annotated locations for NP_997186.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC022542, AY442317, BC035157
    Consensus CDS
    CCDS7592.1
    UniProtKB/Swiss-Prot
    Q5VV63
    UniProtKB/TrEMBL
    Q4G0Y2
    Related
    ENSP00000347152, OTTHUMP00000020555, ENST00000355044, OTTHUMT00000050507
    Conserved Domains (10) summary
    cd03597
    Location:748874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:93208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:10131058
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam01344
    Location:581612
    Kelch_1; Kelch motif
    pfam01437
    Location:889943
    PSI; Plexin repeat
    pfam13415
    Location:480529
    Kelch_3; Galactose oxidase, central domain
    pfam13418
    Location:520571
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:352392
    Kelch_5; Kelch motif
    cl19567
    Location:235280
    DSL; Delta serrate ligand
    sd00038
    Location:521574
    Kelch; KELCH repeat [structural motif]

RNA

  1. NR_074088.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has multiple differences, compared to variant 1, at its 5' and 3' ends including having its transcription extend past a splice site that is used in variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
    Source sequence(s)
    BC029592, BC035157
    Related
    ENST00000616894, OTTHUMT00000050509

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p2 Primary Assembly

    Range
    115093365..115948999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011539587.1XP_011537889.1  

    Conserved Domains (9) summary
    cd03597
    Location:748874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:93208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam01344
    Location:581612
    Kelch_1; Kelch motif
    pfam01437
    Location:889943
    PSI; Plexin repeat
    pfam13415
    Location:480529
    Kelch_3; Galactose oxidase, central domain
    pfam13418
    Location:520571
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:352392
    Kelch_5; Kelch motif
    cl19567
    Location:235280
    DSL; Delta serrate ligand
    sd00038
    Location:521574
    Kelch; KELCH repeat [structural motif]
  2. XM_011539586.1XP_011537888.1  

    Conserved Domains (10) summary
    cd03597
    Location:748874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:93208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:10131058
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam01344
    Location:581612
    Kelch_1; Kelch motif
    pfam01437
    Location:889943
    PSI; Plexin repeat
    pfam13415
    Location:480529
    Kelch_3; Galactose oxidase, central domain
    pfam13418
    Location:520571
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:352392
    Kelch_5; Kelch motif
    cl19567
    Location:235280
    DSL; Delta serrate ligand
    sd00038
    Location:521574
    Kelch; KELCH repeat [structural motif]
  3. XM_011539589.1XP_011537891.1  

    Conserved Domains (9) summary
    cd03597
    Location:748874
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:93208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:10131058
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam01437
    Location:889943
    PSI; Plexin repeat
    pfam13415
    Location:480529
    Kelch_3; Galactose oxidase, central domain
    pfam13418
    Location:520571
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:352392
    Kelch_5; Kelch motif
    cl19567
    Location:235280
    DSL; Delta serrate ligand
    sd00038
    Location:521574
    Kelch; KELCH repeat [structural motif]
  4. XM_011539588.1XP_011537890.1  

    Conserved Domains (10) summary
    cd03597
    Location:681807
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:29141
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:946991
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam01344
    Location:514545
    Kelch_1; Kelch motif
    pfam01437
    Location:822876
    PSI; Plexin repeat
    pfam13415
    Location:413462
    Kelch_3; Galactose oxidase, central domain
    pfam13418
    Location:453504
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:285325
    Kelch_5; Kelch motif
    cl19567
    Location:168213
    DSL; Delta serrate ligand
    sd00038
    Location:454507
    Kelch; KELCH repeat [structural motif]
  5. XM_011539590.1XP_011537892.1  

    See identical proteins and their annotated locations for XP_011537892.1

    Conserved Domains (10) summary
    cd03597
    Location:602728
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00055
    Location:867912
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam01344
    Location:435466
    Kelch_1; Kelch motif
    pfam01437
    Location:743797
    PSI; Plexin repeat
    pfam13415
    Location:334383
    Kelch_3; Galactose oxidase, central domain
    pfam13418
    Location:374425
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:206246
    Kelch_5; Kelch motif
    cl19567
    Location:89134
    DSL; Delta serrate ligand
    sd00038
    Location:375428
    Kelch; KELCH repeat [structural motif]
    cl00049
    Location:362
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
  6. XM_011539591.1XP_011537893.1  

    See identical proteins and their annotated locations for XP_011537893.1

    Conserved Domains (10) summary
    cd03597
    Location:602728
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00055
    Location:867912
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam01344
    Location:435466
    Kelch_1; Kelch motif
    pfam01437
    Location:743797
    PSI; Plexin repeat
    pfam13415
    Location:334383
    Kelch_3; Galactose oxidase, central domain
    pfam13418
    Location:374425
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:206246
    Kelch_5; Kelch motif
    cl19567
    Location:89134
    DSL; Delta serrate ligand
    sd00038
    Location:375428
    Kelch; KELCH repeat [structural motif]
    cl00049
    Location:362
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.

RNA

  1. XR_945653.1 RNA Sequence

Alternate CHM1_1.1

Genomic

  1. NC_018921.2 Alternate CHM1_1.1

    Range
    117136554..117992072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)