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Nphp4 nephronophthisis 4 (juvenile) homolog (human) [ Mus musculus (house mouse) ]

Gene ID: 260305, updated on 8-May-2016
Official Symbol
Nphp4provided by MGI
Official Full Name
nephronophthisis 4 (juvenile) homolog (human)provided by MGI
Primary source
MGI:MGI:2384210
See related
Ensembl:ENSMUSG00000039577 Vega:OTTMUSG00000010703
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
nmf192; 4930564O18Rik
Orthologs
Location:
4; 4 E2
Exon count:
34
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 4 NC_000070.6 (152473881..152563184)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (151852251..151937293)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene ribosomal protein L22 Neighboring gene chromodomain helicase DNA binding protein 5 Neighboring gene potassium voltage-gated channel, shaker-related subfamily, beta member 2 Neighboring gene predicted gene, 30734 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Chemically induced (ENU) (1) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
photoreceptor cell maintenance IMP
Inferred from Mutant Phenotype
more info
PubMed 
photoreceptor cell outer segment organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
retina development in camera-type eye IMP
Inferred from Mutant Phenotype
more info
PubMed 
sperm motility IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 
cell junction IEA
Inferred from Electronic Annotation
more info
 
cell projection IEA
Inferred from Electronic Annotation
more info
 
cell-cell junction ISO
Inferred from Sequence Orthology
more info
 
centrosome ISO
Inferred from Sequence Orthology
more info
 
ciliary base IDA
Inferred from Direct Assay
more info
PubMed 
ciliary transition zone IDA
Inferred from Direct Assay
more info
PubMed 
cilium IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
nonmotile primary cilium IEA
Inferred from Electronic Annotation
more info
 
photoreceptor connecting cilium IDA
Inferred from Direct Assay
more info
PubMed 
ribbon synapse IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
nephrocystin-4
Names
nephroretinin

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153424.2NP_700473.2  nephrocystin-4

    See identical proteins and their annotated locations for NP_700473.2

    Status: VALIDATED

    Source sequence(s)
    AF537131, AK084539, AY118229, BP753185
    Consensus CDS
    CCDS38985.1
    UniProtKB/Swiss-Prot
    P59240
    UniProtKB/TrEMBL
    Q8CGY9
    Related
    ENSMUSP00000080128, ENSMUST00000081393
    Conserved Domains (1) summary
    pfam11235
    Location:373536
    Med25_SD1; Mediator complex subunit 25 synapsin 1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p3 C57BL/6J

    Range
    152473881..152563184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006538871.2XP_006538934.1  

    See identical proteins and their annotated locations for XP_006538934.1

    Conserved Domains (1) summary
    pfam11235
    Location:385548
    Med25_SD1; Mediator complex subunit 25 synapsin 1
  2. XM_006538873.2XP_006538936.1  

    See identical proteins and their annotated locations for XP_006538936.1

    UniProtKB/Swiss-Prot
    P59240
    Conserved Domains (1) summary
    pfam11235
    Location:373536
    Med25_SD1; Mediator complex subunit 25 synapsin 1
  3. XM_006538867.2XP_006538930.1  

    See identical proteins and their annotated locations for XP_006538930.1

    Conserved Domains (1) summary
    pfam11235
    Location:385548
    Med25_SD1; Mediator complex subunit 25 synapsin 1
  4. XM_006538872.2XP_006538935.1  

    See identical proteins and their annotated locations for XP_006538935.1

    UniProtKB/Swiss-Prot
    P59240
    Related
    ENSMUSP00000049920, OTTMUSP00000011441, ENSMUST00000056567, OTTMUST00000024971
    Conserved Domains (1) summary
    pfam11235
    Location:373536
    Med25_SD1; Mediator complex subunit 25 synapsin 1
  5. XM_006538875.2XP_006538938.1  

    Conserved Domains (1) summary
    pfam10846
    Location:166357
    DUF2722; Protein of unknown function (DUF2722)
  6. XM_006538874.2XP_006538937.1  

    Conserved Domains (1) summary
    pfam11235
    Location:385548
    Med25_SD1; Mediator complex subunit 25 synapsin 1
  7. XM_006538869.2XP_006538932.1  

    See identical proteins and their annotated locations for XP_006538932.1

    Conserved Domains (1) summary
    pfam11235
    Location:385548
    Med25_SD1; Mediator complex subunit 25 synapsin 1
  8. XM_006538868.2XP_006538931.1  

    See identical proteins and their annotated locations for XP_006538931.1

    Conserved Domains (1) summary
    pfam11235
    Location:385548
    Med25_SD1; Mediator complex subunit 25 synapsin 1
  9. XM_006538870.2XP_006538933.1  

    See identical proteins and their annotated locations for XP_006538933.1

    Conserved Domains (1) summary
    pfam11235
    Location:385548
    Med25_SD1; Mediator complex subunit 25 synapsin 1
  10. XM_011250257.1XP_011248559.1  

    See identical proteins and their annotated locations for XP_011248559.1

    Conserved Domains (1) summary
    pfam11235
    Location:385548
    Med25_SD1; Mediator complex subunit 25 synapsin 1

Alternate Mm_Celera

Genomic

  1. AC_000026.1 Alternate Mm_Celera

    Range
    154764281..154849333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)