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    COBRA1 cofactor of BRCA1 [ Homo sapiens ]

    Gene ID: 25920, updated on 19-May-2012

    Summary

    Official Symbol
    COBRA1provided by HGNC
    Official Full Name
    cofactor of BRCA1provided by HGNC
    Primary source
    HGNC:24324
    Locus tag
    RP13-122B23.3
    See related
    Ensembl:ENSG00000188986; HPRD:10845; MIM:611180; Vega:OTTHUMG00000131778
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NELFB; NELF-B; KIAA1182; RP13-122B23.3; DKFZp586B0519
    Summary
    NELFB is a subunit of negative elongation factor (NELF), which also includes NELFA (WHSC2; MIM 606026), either NELFC or NELFD (TH1L; MIM 605297), and NELFE (RDBP; MIM 154040). NELF acts with DRB sensitivity-inducing factor (DSIF), a heterodimer of SPT4 (SUPT4H1; MIM 603555) and SPT5 (SUPT5H; MIM 602102), to cause transcriptional pausing of RNA polymerase II (see MIM 180660) (Narita et al., 2003 [PubMed 12612062]).[supplied by OMIM, Mar 2008]

    Genomic context

    Location :
    9q34
    Sequence :
    Chromosome: 9; NC_000009.11 (140149759..140168000)
    See COBRA1 in Epigenomics, MapViewer

    Chromosome 9 - NC_000009.11Genomic Context describing neighboring genes Neighboring gene tubulin, beta 4B class IVb Neighboring gene family with sequence similarity 166, member A Neighboring gene uncharacterized LOC100129722 Neighboring gene chromosome 9 open reading frame 173 Neighboring gene torsin family 4, member A Neighboring gene NOTCH-regulated ankyrin repeat protein

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    HIV-1 protein interactions

    Protein Gene Interaction Pubs
    Tat tat NELF associates with HIV-1 Tat as part of the HIV-1 transcription elongation complex PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    Q8WX92 P38398 BRCA1    HPRD  PubMed  
    Q8WX92 P03372 ESR1    HPRD  PubMed  
    Q8WX92 P01100 FOS    HPRD  PubMed  
    Q8WX92 P05412 JUN    HPRD  PubMed  
    Q8WX92 P18615 RDBP    HPRD  PubMed  
    BioGRID:117421 BioGRID:106726 ALDH3A2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:117421 BioGRID:106966 ATP1A1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:117421 BioGRID:107140 BRCA1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:117421 BioGRID:115933 CCT8    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:117421 BioGRID:107482 CEBPE    BioGRID  PubMed Two-hybrid 
    BioGRID:117421 BioGRID:108403 ESR1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:117421 BioGRID:108636 FOS    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:117421 BioGRID:109928 JUN    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:117421 BioGRID:111583 MAPK6    BioGRID  PubMed Two-hybrid 
    BioGRID:117421 BioGRID:110573 MSH2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:117421 BioGRID:113662 RDBP    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:117421 BioGRID:112099 RPN1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:117421 BioGRID:119572 TH1L    BioGRID  PubMed Affinity Capture-MS; Reconstituted Complex 
    BioGRID:117421 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:117421 BioGRID:113307 WHSC2    BioGRID  PubMed Affinity Capture-MS; Reconstituted Complex 

    General gene information

    Homology

    Pathways from BioSystems

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
     
    Process Evidence Code Pubs
    gene expression TAS
    Traceable Author Statement
    more info
     
    negative regulation of transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of viral transcription TAS
    Traceable Author Statement
    more info
     
    transcription elongation from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    transcription from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    viral reproduction TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    NOT nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    negative elongation factor B
    Names
    negative elongation factor B
    negative elongation factor protein B

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_015456.3NP_056271.2  negative elongation factor B

      Status: VALIDATED

      Source sequence(s)
      AK022651, AL050280, BC019029, DA210427
      Consensus CDS
      CCDS7040.1
      UniProtKB/Swiss-Prot
      Q8WX92
      Related
      ENSP00000339495, OTTHUMP00000162585, ENST00000343053, OTTHUMT00000254710
      Conserved Domains (1) summary
      pfam06209
      Location:106564
      Blast Score: 1814
      COBRA1; Cofactor of BRCA1 (COBRA1)

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000009.11 Reference GRCh37.p5 Primary Assembly

      Range
      140149759..140168000
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000141.1 Alternate HuRef

      Range
      109609072..109627292
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic BX255925.17 CAM24149.1
    genomic CH471090.1 EAW88377.1
      EAW88378.1
    mRNA AB033008.1 BAA86496.1
    mRNA AF464935.1 AAL69965.1
    mRNA AK022651.1 BAB14157.1
    mRNA AK091056.1 BAG52272.1
    mRNA AL050280.1 CAB43381.3
    mRNA BC011892.1 AAH11892.1
    mRNA BC019029.1 None
    mRNA DA210427.1 None
    other-genetic AM393289.1 CAL38167.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8WX92.1 GenPept UniProtKB/Swiss-Prot:Q8WX92

      Supplemental Content

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