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Sdc2 syndecan 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 25615, updated on 8-May-2016
Official Symbol
Sdc2provided by RGD
Official Full Name
syndecan 2provided by RGD
Primary source
RGD:3649
See related
Ensembl:ENSRNOG00000004936
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
HSPG
Summary
heparan sulfate proteoglycan core protein; may play a role in cell-cell interactions [RGD, Feb 2006]
Orthologs
Location:
7q22
Exon count:
6
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (71572731..71686139)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 7 NC_005106.3 (71743895..71857365)

Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene establishment of cohesion 1 homolog 2 (S. cerevisiae), pseudogene 1 Neighboring gene similar to LIM motif-containing protein kinase 2 isoform b Neighboring gene uncharacterized LOC102546302 Neighboring gene ligand-dependent nuclear receptor-interacting factor 1-like Neighboring gene translationally-controlled tumor protein pseudogene Neighboring gene carboxypeptidase Q Neighboring gene TSPY-like 5

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
PDZ domain binding IEA
Inferred from Electronic Annotation
more info
 
PDZ domain binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell migration IBA
Inferred from Biological aspect of Ancestor
more info
 
dendrite morphogenesis IEP
Inferred from Expression Pattern
more info
PubMed 
regulation of dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 
regulation of dendrite morphogenesis ISO
Inferred from Sequence Orthology
more info
 
regulation of dendrite morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
response to caffeine IEP
Inferred from Expression Pattern
more info
PubMed 
response to hypoxia IEP
Inferred from Expression Pattern
more info
PubMed 
wound healing IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
cell surface IBA
Inferred from Biological aspect of Ancestor
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
neuronal cell body IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane TAS
Traceable Author Statement
more info
 
colocalizes_with synapse IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
syndecan-2
Names
Ryudocan/syndecan 2
SYND2
fibroglycan
heparan sulfate proteoglycan core protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013082.3NP_037214.1  syndecan-2 precursor

    See identical proteins and their annotated locations for NP_037214.1

    Status: PROVISIONAL

    Source sequence(s)
    M81687
    UniProtKB/Swiss-Prot
    P34900
    UniProtKB/TrEMBL
    Q6IRK3
    Related
    ENSRNOP00000007255, ENSRNOT00000007255
    Conserved Domains (1) summary
    pfam01034
    Location:146209
    Syndecan; Syndecan domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

    Range
    71572731..71686139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006241518.2XP_006241580.1  

    Conserved Domains (1) summary
    pfam01034
    Location:159222
    Syndecan; Syndecan domain

Alternate Rn_Celera

Genomic

  1. AC_000075.1 Alternate Rn_Celera

    Range
    61250356..61362471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)