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Rps5 ribosomal protein S5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 25538, updated on 19-Mar-2015
Official Symbol
Rps5provided by RGD
Official Full Name
ribosomal protein S5provided by RGD
Primary source
RGD:3601
See related
Ensembl:ENSRNOG00000019453
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Summary
mouse homolog is a component of the 40S subunit [RGD, Feb 2006]
Orthologs
See Rps5 in MapViewer
Location:
1q21
Exon count:
6
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (65660470..65664767, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (66471608..66475905, complement)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene KH homology domain-containing protein 1-like Neighboring gene ring finger protein 225 Neighboring gene zinc finger protein 8-like Neighboring gene zinc finger protein 110

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
mRNA binding IEA
Inferred from Electronic Annotation
more info
 
mRNA binding ISO
Inferred from Sequence Orthology
more info
 
molecular_function ND
No biological Data available
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
regulation of translational fidelity IEA
Inferred from Electronic Annotation
more info
 
regulation of translational fidelity ISO
Inferred from Sequence Orthology
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
translation ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 
cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
cytosolic small ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
 
extracellular exosome IEA
Inferred from Electronic Annotation
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
focal adhesion IEA
Inferred from Electronic Annotation
more info
 
focal adhesion ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
ribonucleoprotein complex ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
40S ribosomal protein S5
Names
40S ribosomal protein S5

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277243.1NP_001264172.1  40S ribosomal protein S5 isoform 1

    See proteins identical to NP_001264172.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AABR07002066, FM052146
    UniProtKB/TrEMBL
    B0BN81
    Related
    ENSRNOP00000026528, ENSRNOT00000026528
    Conserved Domains (1) summary
    cd14867
    Location:18204
    uS7_Eukaryote; Eukaryota homolog of Ribosomal Protein S7
  2. NM_001277244.1NP_001264173.1  40S ribosomal protein S5 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame exon in the coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.
    Source sequence(s)
    AABR07002066, FM052146
    Conserved Domains (1) summary
    cd14867
    Location:18171
    uS7_Eukaryote; Eukaryota homolog of Ribosomal Protein S7

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    65660470..65664767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    60295732..60300029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001105722.1: Suppressed sequence

    Description
    NM_001105722.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.