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sdo1 putative SBDS family ribosome maturation protein Sdo1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543459, updated on 13-Mar-2024

Summary

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Gene symbol
sdo1
Gene description
putative SBDS family ribosome maturation protein Sdo1
Primary source
PomBase:SPAC4F8.03
Locus tag
SPAC4F8.03
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPAC644.01c
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Genomic context

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See sdo1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (2671901..2673213, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene putative mitochondrial ribosomal protein subunit S12 Neighboring gene putative Brix domain-containing protein Rpf1 Neighboring gene putative mitochondrial ribosomal protein subunit L28 Neighboring gene putative mitochondrial ribosomal protein subunit L40 Neighboring gene ESCRT III complex subunit Did4 Neighboring gene RNA 5'-triphosphatase Neighboring gene putative deoxyuridine 5'-triphosphate nucleotidohydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A non-transcriptional role for the glucocorticoid receptor in mediating the cell stress response. Ptushkina M, et al. Sci Rep, 2017 Sep 21. PMID 28935859, Free PMC Article
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in ribosome biogenesis ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleolus HDA PubMed 
is_active_in nucleus HDA PubMed 
part_of preribosome, large subunit precursor ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
putative SBDS family ribosome maturation protein Sdo1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2671901..2673213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019298.2 → NP_593869.1  putative SBDS family ribosome maturation protein Sdo1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593869.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14179
    Conserved Domains (3) summary
    COG1500
    Location:9 → 245
    Sdo1; Ribosome maturation protein Sdo1 [Translation, ribosomal structure and biogenesis]
    pfam01172
    Location:17 → 98
    SBDS; Shwachman-Bodian-Diamond syndrome (SBDS) protein
    pfam09377
    Location:108 → 226
    SBDS_C; SBDS protein C-terminal domain
Nucleotide Protein
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