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scs7 sphingosine hydroxylase Scs7 [ Schizosaccharomyces pombe 972h- ]

Gene ID: 2542519, updated on 3-May-2015
Gene symbol
scs7
Gene description
sphingosine hydroxylase Scs7
Primary source
PomBase:SPAC19G12.08
Locus tag
SPAC19G12.08
Gene type
protein coding
RNA name
sphingosine hydroxylase Scs7
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe 972h- (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
See scs7 in MapViewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (4056794..4058815)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene histone H2A beta Neighboring gene RNA-binding protein Rsd1 (predicted) Neighboring gene tRNA Neighboring gene NADH/NADPH dependent indole-3-acetaldehyde reductase AKR3C2

Products Interactant Other Gene Complex Source Pubs Description

3'UTR

  • Loc: 4058290-4058815

5'UTR

  • Loc: 4056794-4056957

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
iron ion binding IEA
Inferred from Electronic Annotation
more info
 
sphingosine hydroxylase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
mannosyl-inositol phosphorylceramide metabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
endoplasmic reticulum membrane IC
Inferred by Curator
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4056794..4058815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019852.2NP_594423.1  sphingosine hydroxylase Scs7 [Schizosaccharomyces pombe 972h-]

    See identical proteins and their annotated locations for NP_594423.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13846
    Conserved Domains (3) summary
    COG3000
    Location:188347
    ERG3; Sterol desaturase [Lipid metabolism]
    COG5274
    Location:1184
    CYB5; Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
    cl01132
    Location:108331
    FA_hydroxylase; Fatty acid hydroxylase superfamily