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SPAC17H9.04c RNA-binding protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542253, updated on 13-Mar-2024

Summary

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Gene symbol
SPAC17H9.04c
Gene description
RNA-binding protein
Primary source
PomBase:SPAC17H9.04c
Locus tag
SPAC17H9.04c
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (2009345..2011903, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene putative poly(A) polymerase Cid16 Neighboring gene putative TRAMP complex ATP-dependent RNA helicase Neighboring gene RAD51D-like protein 1 Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene putative rRNA processing protein Ebp2 Neighboring gene putative signal recognition particle subunit Srp21

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Putative RNA-Binding Protein Dri1 Promotes the Loading of Kinesin-14/Klp2 to the Mitotic Spindle and Is Sequestered into Heat-Induced Protein Aggregates in Fission Yeast. Yukawa M, et al. Int J Mol Sci, 2021 Apr 30. PMID 33946513, Free PMC Article
  2. Dri1 mediates heterochromatin assembly via RNAi and histone deacetylation. Ban H, et al. Genetics, 2021 May 17. PMID 33693625, Free PMC Article
  3. Megadalton-node assembly by binding of Skb1 to the membrane anchor Slf1. Deng L, et al. Mol Biol Cell, 2014 Sep 1. PMID 25009287, Free PMC Article
  4. Systematic screen of Schizosaccharomyces pombe deletion collection uncovers parallel evolution of the phosphate signal transduction pathway in yeasts. Henry TC, et al. Eukaryot Cell, 2011 Feb. PMID 21169418, Free PMC Article
  5. Nucleocytoplasmic transport in the midzone membrane domain controls yeast mitotic spindle disassembly. Lucena R, et al. J Cell Biol, 2015 May 11. PMID 25963819, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA binding EXP
Inferred from Experiment
more info
 PubMed 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cellular response to temperature stimulus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of heterochromatin formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm EXP
Inferred from Experiment
more info
 PubMed 
NOT is_active_in nucleus EXP
Inferred from Experiment
more info
 PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in protein aggregate center IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2009345..2011903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019006.2 → NP_593574.1  RNA-binding protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593574.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13801
    Conserved Domains (5) summary
    smart00547
    Location:562 → 585
    ZnF_RBZ; Zinc finger domain
    COG0724
    Location:233 → 317
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12452
    Location:244 → 326
    RRM_ARP_like; RNA recognition motif in yeast asparagine-rich protein (ARP) and similar proteins
    sd00025
    Location:347 → 366
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:343 → 371
    zf-RanBP; Zn-finger in Ran binding protein and others
Nucleotide Protein
Heading Accession and Version

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