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SPBP22H7.02c putative RNA-binding protein Mrd1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541303, updated on 11-Apr-2024

Summary

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Gene symbol
SPBP22H7.02c
Gene description
putative RNA-binding protein Mrd1
Locus tag
SPBP22H7.02c
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (1433225..1436127, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene putative ATP-dependent RNA helicase Mss116 Neighboring gene putative transporter Neighboring gene putative beta-glucan synthesis-associated protein Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene putative bromodomain-containing ATPase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteome-wide search for PP2A substrates in fission yeast. Bernal M, et al. Proteomics, 2014 Jun. PMID 24634168
  2. Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast. Larochelle M, et al. J Cell Sci, 2019 May 31. PMID 31064814
  3. Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome. Telekawa C, et al. Nucleic Acids Res, 2018 Nov 30. PMID 30321377, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in rRNA processing ISO
Inferred from Sequence Orthology
more info
  
involved_in small-subunit processome assembly ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of 90S preribosome ISO
Inferred from Sequence Orthology
more info
  
is_active_in nuclear speck IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleolus HDA PubMed 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
putative RNA-binding protein Mrd1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1433225..1436127 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021494.2 → NP_595599.1  putative RNA-binding protein Mrd1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595599.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13620, Q9UTU1
    Conserved Domains (7) summary
    COG0724
    Location:232 → 421
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12565
    Location:2 → 81
    RRM1_MRD1; RNA recognition motif 1 in yeast multiple RNA-binding domain-containing protein 1 (MRD1) and similar proteins
    cd12566
    Location:321 → 399
    RRM2_MRD1; RNA recognition motif 2 in yeast multiple RNA-binding domain-containing protein 1 (MRD1) and similar proteins
    cd12568
    Location:506 → 577
    RRM3_MRD1; RNA recognition motif 3 in yeast multiple RNA-binding domain-containing protein 1 (MRD1) and similar proteins
    cd12570
    Location:721 → 796
    RRM5_MRD1; RNA recognition motif 5 in yeast multiple RNA-binding domain-containing protein 1 (MRD1) and similar proteins
    TIGR01661
    Location:508 → 799
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:619 → 702
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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