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SPBC24C6.02 putative ATP-dependent RNA helicase Spb4 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540598, updated on 13-Mar-2024

Summary

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Gene symbol
SPBC24C6.02
Gene description
putative ATP-dependent RNA helicase Spb4
Primary source
PomBase:SPBC24C6.02
Locus tag
SPBC24C6.02
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003423.3 (2320336..2322561)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene tRNA-Pro Neighboring gene miscRNA Neighboring gene ubiquitin-like protein modifier Ned8 Neighboring gene putative proline--tRNA (Pro) ligase Neighboring gene 5S ribosomal RNA Neighboring gene putative delta-1-pyrroline-5-carboxylate dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome. Telekawa C, et al. Nucleic Acids Res, 2018 Nov 30. PMID 30321377, Free PMC Article
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA helicase activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in rRNA processing ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in nucleolus HDA PubMed 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative ATP-dependent RNA helicase Spb4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2320336..2322561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021865.2 → NP_595956.1  putative ATP-dependent RNA helicase Spb4 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595956.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74764
    Conserved Domains (6) summary
    smart00487
    Location:16 → 216
    DEXDc; DEAD-like helicases superfamily
    TIGR02794
    Location:487 → 600
    tolA_full; TolA protein
    TIGR04420
    Location:503 → 558
    Sec_Non_Glob; Sec region non-globular protein
    pfam00271
    Location:243 → 345
    Helicase_C; Helicase conserved C-terminal domain
    pfam13959
    Location:400 → 459
    DUF4217; Domain of unknown function (DUF4217)
    cl21455
    Location:3 → 215
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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