U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

spp27 RNA polymerase I upstream activation factor complex subunit Spp27 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539310, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
spp27
Gene description
RNA polymerase I upstream activation factor complex subunit Spp27
Primary source
PomBase:SPCC285.17
Locus tag
SPCC285.17
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
uaf30
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_003421.2 (1831913..1834169)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene nucleoporin Nup60 Neighboring gene putative TRAPP complex subunit Trs130 Neighboring gene 40S ribosomal protein S28 Neighboring gene DNA mismatch repair protein Neighboring gene miscRNA Neighboring gene putative ubiquitin-protein ligase E3 Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene no message in thiamine Nmt1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of the fission yeast ribosomal DNA binding factor: components share homology with Upstream Activating Factor and with SWI/SNF subunits. Liu M, et al. Nucleic Acids Res, 2002 Dec 15. PMID 12490702, Free PMC Article
  2. Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. Anver S, et al. EMBO Rep, 2014 Aug. PMID 24957674, Free PMC Article
  3. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article
  4. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article
  5. A non-transcriptional role for the glucocorticoid receptor in mediating the cell stress response. Ptushkina M, et al. Sci Rep, 2017 Sep 21. PMID 28935859, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA polymerase I cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase I general transcription initiation factor activity IC
Inferred by Curator
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleolar large rRNA transcription by RNA polymerase I IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription initiation at RNA polymerase I promoter EXP
Inferred from Experiment
more info
 PubMed 
involved_in transcription initiation at RNA polymerase I promoter IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of RNA polymerase I upstream activating factor complex EXP
Inferred from Experiment
more info
 PubMed 
part_of RNA polymerase I upstream activating factor complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RNA polymerase I upstream activation factor complex subunit Spp27

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    1831913..1834169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023336.2 → NP_588345.1  RNA polymerase I upstream activation factor complex subunit Spp27 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588345.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74503
    Conserved Domains (3) summary
    COG5531
    Location:1 → 233
    Rsc6; Chromatin remodeling complex protein RSC6, contains SWIB domain [Chromatin structure and dynamics]
    pfam02201
    Location:119 → 191
    SWIB; SWIB/MDM2 domain
    pfam08766
    Location:2 → 52
    DEK_C; DEK C terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials