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SPCC126.13c putative SAP128 family histone deacetylase complex subunit [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539066, updated on 11-Apr-2024

Summary

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Gene symbol
SPCC126.13c
Gene description
putative SAP128 family histone deacetylase complex subunit
Primary source
PomBase:SPCC126.13c
Locus tag
SPCC126.13c
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003421.2 (2139883..2141364, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene NGG1 interacting factor 3 family protein Neighboring gene tRNA-Asn Neighboring gene putative U5 snRNP-associated protein Prp18 Neighboring gene putative signal recognition particle subunit Sec65 Neighboring gene putative U6 snRNP-associated core protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article
  2. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
  3. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
  
enables transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
part_of ASAP complex ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative SAP128 family histone deacetylase complex subunit

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    2139883..2141364 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023447.2 → NP_588456.1  putative SAP128 family histone deacetylase complex subunit [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588456.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94405
    Conserved Domains (1) summary
    pfam06487
    Location:23 → 136
    SAP18; Sin3 associated polypeptide p18 (SAP18)
Nucleotide Protein
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