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    CG30417 [ Drosophila melanogaster ]

    Gene ID: 246604, updated on 8-Jan-2012
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    Summary

    Official Symbol
    CG30417provided by Flybase
    Primary source
    FLYBASE:FBgn0050417
    Locus tag
    Dmel_CG30417
    Gene type
    protein coding
    RNA name
    CG30417
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG17692; Dmel\CG30417
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    Genomic context

    Location :
    59D6-59D6
    Sequence :
    Chromosome: 2R; NT_033778.3 (19214262..19215104, complement)
    See CG30417 in Epigenomics, MapViewer

    Chromosome 2R - NT_033778.3Genomic Context describing neighboring genes Neighboring gene CG30412 gene product from transcript CG30412-RA Neighboring gene CG30416 gene product from transcript CG30416-RB Neighboring gene CG9861 gene product from transcript CG9861-RA Neighboring gene CG30413 gene product from transcript CG30413-RA Neighboring gene CG3502 gene product from transcript CG3502-RB Neighboring gene CG9863 gene product from transcript CG9863-RB

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP). Hoskins RA, et al. Nucleic Acids Res, 2005 Dec 2. PMID 16326860.
    4. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    5. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.

    See all (10) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:73158 BioGRID:65778 CG14647    BioGRID  PubMed Two-hybrid 
    BioGRID:73158 BioGRID:58391 CG2909    BioGRID  PubMed Two-hybrid 
    BioGRID:73158 BioGRID:76912 CG31111    BioGRID  PubMed Two-hybrid 
    BioGRID:73158 BioGRID:60672 CG6770    BioGRID  PubMed Two-hybrid 
    BioGRID:73158 BioGRID:61105 amos    BioGRID  PubMed Two-hybrid 
    BioGRID:73158 BioGRID:58193 fs(1)h    BioGRID  PubMed Two-hybrid 
    BioGRID:73158 BioGRID:62027 inv    BioGRID  PubMed Two-hybrid 
    BioGRID:73158 BioGRID:66781 rdx    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG30417 gene: The CG30417 gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, mosquito, C.elegans, S.cerevisiae, K.lactis, and E.gossypii.
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    General protein information

    Preferred Names
    CG30417 gene product from transcript CG30417-RA
    Names
    CG30417
    CG30417-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.3

      Range
      19214262..19215104, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_166592.2 → NP_726307.1  CG30417 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W1S2
      Related
      FBpp0071950
      Conserved Domains (1) summary
      cd05498
      Location:13 – 114
      Blast Score: 443
      Bromo_Brdt_II_like; Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino ...
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA BT022172.1 AAY51566.1
    genomic AE013599.4 AAF46981.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    Q9W1S2.1 GenPept
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    Additional Links

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content