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Rpgrip1l Rpgrip1-like [ Mus musculus (house mouse) ]

Gene ID: 244585, updated on 19-Jul-2014
Official Symbol
Rpgrip1lprovided by MGI
Official Full Name
Rpgrip1-likeprovided by MGI
Primary source
MGI:1920563
See related
Ensembl:ENSMUSG00000033282; Vega:OTTMUSG00000024417
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ftm; Nphp8; 4931437C01; 1700047E16Rik
See Rpgrip1l in Epigenomics, MapViewer
Location:
8 C5; 8 44.29 cM
Exon count :
29
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) 8 NC_000074.6 (91217030..91313222, complement)

Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene retinoblastoma-like 2 Neighboring gene thymoma viral proto-oncogene 1 interacting protein Neighboring gene karyopherin alpha 7 (importin alpha 8) pseudogene Neighboring gene uncharacterized LOC102640089 Neighboring gene uncharacterized LOC102639977 Neighboring gene abhydrolase domain containing 10 pseudogene Neighboring gene fat mass and obesity associated Neighboring gene RIKEN cDNA 4831440D22 gene Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
 
thromboxane A2 receptor binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
brain development IMP
Inferred from Mutant Phenotype
more info
PubMed 
camera-type eye development IMP
Inferred from Mutant Phenotype
more info
PubMed 
cerebellum development IMP
Inferred from Mutant Phenotype
more info
PubMed 
cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
cilium morphogenesis IMP
Inferred from Mutant Phenotype
more info
 
corpus callosum development IMP
Inferred from Mutant Phenotype
more info
PubMed 
determination of left/right symmetry IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic forelimb morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic hindlimb morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
establishment or maintenance of cell polarity IMP
Inferred from Mutant Phenotype
more info
 
head development IMP
Inferred from Mutant Phenotype
more info
PubMed 
in utero embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
kidney development IMP
Inferred from Mutant Phenotype
more info
PubMed 
lateral ventricle development IMP
Inferred from Mutant Phenotype
more info
PubMed 
limb morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
liver development IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of G-protein coupled receptor protein signaling pathway ISO
Inferred from Sequence Orthology
more info
 
neural tube patterning IMP
Inferred from Mutant Phenotype
more info
PubMed 
nose development IMP
Inferred from Mutant Phenotype
more info
PubMed 
olfactory bulb development IMP
Inferred from Mutant Phenotype
more info
PubMed 
pericardium development IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of smoothened signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
telencephalon development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
axoneme ISA
Inferred from Sequence Alignment
more info
PubMed 
cell junction IEA
Inferred from Electronic Annotation
more info
 
cell projection IEA
Inferred from Electronic Annotation
more info
 
cell-cell junction ISO
Inferred from Sequence Orthology
more info
 
centrosome ISA
Inferred from Sequence Alignment
more info
PubMed 
centrosome ISO
Inferred from Sequence Orthology
more info
 
ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
ciliary basal body ISA
Inferred from Sequence Alignment
more info
PubMed 
cilium ISA
Inferred from Sequence Alignment
more info
PubMed 
cytoplasm ISA
Inferred from Sequence Alignment
more info
PubMed 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
tight junction IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
protein fantom
Names
protein fantom
fantom
nephrocystin-8
RPGRIP1-like protein
RPGR-interacting protein 1-like protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173431.2NP_775607.2  protein fantom

    See proteins identical to NP_775607.2

    Status: VALIDATED

    Source sequence(s)
    AC139351, AJ344253, AK006705
    Consensus CDS
    CCDS22520.1
    UniProtKB/Swiss-Prot
    Q8CG73
    Related
    ENSMUSP00000042702, OTTMUSP00000029151, ENSMUST00000047783, OTTMUST00000059851
    Conserved Domains (3) summary
    cd00030
    Location:792891
    Blast Score: 154
    C2; C2 domain
    COG0419
    Location:47573
    Blast Score: 216
    SbcC; ATPase involved in DNA repair [DNA replication, recombination, and repair]
    pfam11618
    Location:631737
    Blast Score: 410
    DUF3250; Protein of unknown function (DUF3250)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000074.6 

    Range
    91217030..91313222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006530994.1XP_006531057.1  

    Conserved Domains (2) summary
    COG0419
    Location:47577
    Blast Score: 194
    SbcC; ATPase involved in DNA repair [DNA replication, recombination, and repair]
    pfam11618
    Location:635723
    Blast Score: 359
    DUF3250; Protein of unknown function (DUF3250)
  2. XM_006530993.1XP_006531056.1  

    Conserved Domains (3) summary
    cd00030
    Location:715789
    Blast Score: 106
    C2; C2 domain
    COG0419
    Location:47577
    Blast Score: 206
    SbcC; ATPase involved in DNA repair [DNA replication, recombination, and repair]
    pfam11618
    Location:635721
    Blast Score: 351
    DUF3250; Protein of unknown function (DUF3250)
  3. XM_006530991.1XP_006531054.1  

    See proteins identical to XP_006531054.1

    Conserved Domains (3) summary
    cd00030
    Location:796895
    Blast Score: 154
    C2; C2 domain
    COG0419
    Location:47577
    Blast Score: 217
    SbcC; ATPase involved in DNA repair [DNA replication, recombination, and repair]
    pfam11618
    Location:635741
    Blast Score: 410
    DUF3250; Protein of unknown function (DUF3250)
  4. XM_006530992.1XP_006531055.1  

    See proteins identical to XP_006531055.1

    Conserved Domains (3) summary
    cd00030
    Location:796895
    Blast Score: 154
    C2; C2 domain
    COG0419
    Location:47577
    Blast Score: 217
    SbcC; ATPase involved in DNA repair [DNA replication, recombination, and repair]
    pfam11618
    Location:635741
    Blast Score: 410
    DUF3250; Protein of unknown function (DUF3250)
  5. XM_006530995.1XP_006531058.1  

    Conserved Domains (2) summary
    cd00030
    Location:412511
    Blast Score: 152
    C2; C2 domain
    pfam11618
    Location:251357
    Blast Score: 409
    DUF3250; Protein of unknown function (DUF3250)
  6. XM_006530996.1XP_006531059.1  

    Conserved Domains (1) summary
    pfam11618
    Location:635721
    Blast Score: 346
    DUF3250; Protein of unknown function (DUF3250)

RNA

  1. XR_387743.1 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000030.1 

    Range
    95531605..95629333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

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