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Tox3 TOX high mobility group box family member 3 [ Mus musculus (house mouse) ]

Gene ID: 244579, updated on 8-May-2016
Official Symbol
Tox3provided by MGI
Official Full Name
TOX high mobility group box family member 3provided by MGI
Primary source
MGI:MGI:3039593
See related
Ensembl:ENSMUSG00000043668 Vega:OTTMUSG00000040003
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
500-9; CAGF9; Tnrc9; BC052044; C230068E13
Orthologs
Location:
8 C4; 8 43.96 cM
Exon count:
9
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 8 NC_000074.6 (90247037..90349066, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (92771009..92872151, complement)

Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 35542 Neighboring gene predicted gene, 35593 Neighboring gene predicted gene, 39219 Neighboring gene predicted gene, 35797

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
chromatin binding ISO
Inferred from Sequence Orthology
more info
 
estrogen response element binding ISO
Inferred from Sequence Orthology
more info
 
phosphoprotein binding ISO
Inferred from Sequence Orthology
more info
 
protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
calcium-mediated signaling ISO
Inferred from Sequence Orthology
more info
 
negative regulation of neuron apoptotic process ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
TOX high mobility group box family member 3
Names
trinucleotide repeat containing 9
trinucleotide repeat-containing gene 9 protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172913.3NP_766501.2  TOX high mobility group box family member 3

    See identical proteins and their annotated locations for NP_766501.2

    Status: VALIDATED

    Source sequence(s)
    BC052044, CK619337
    Consensus CDS
    CCDS22516.1
    UniProtKB/Swiss-Prot
    Q80W03
    Related
    ENSMUSP00000105250, OTTMUSP00000058069, ENSMUST00000109621, OTTMUST00000103881
    Conserved Domains (1) summary
    cd00084
    Location:254319
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000074.6 Reference GRCm38.p3 C57BL/6J

    Range
    90247037..90349066 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006530988.2XP_006531051.1  

    Conserved Domains (1) summary
    cd00084
    Location:238303
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
  2. XM_006530989.2XP_006531052.1  

    Conserved Domains (1) summary
    cd00084
    Location:237302
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
  3. XM_006530987.1XP_006531050.1  

    See identical proteins and their annotated locations for XP_006531050.1

    Conserved Domains (1) summary
    cd00084
    Location:253318
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
  4. XM_011248379.1XP_011246681.1  

    Conserved Domains (1) summary
    cd00084
    Location:237302
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

Alternate Mm_Celera

Genomic

  1. AC_000030.1 Alternate Mm_Celera

    Range
    94556870..94657697 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)