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    BACE1 beta-site APP-cleaving enzyme 1 [ Homo sapiens (human) ]

    Gene ID: 23621, updated on 16-Jun-2013
    Official Symbol
    BACE1provided by HGNC
    Official Full Name
    beta-site APP-cleaving enzyme 1provided by HGNC
    Primary source
    HGNC:933
    See related
    Ensembl:ENSG00000186318; HPRD:07255; MIM:604252; Vega:OTTHUMG00000160636
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ASP2; BACE; HSPC104
    Summary
    Cerebral deposition of amyloid beta peptide is an early and critical feature of Alzheimer's disease. Amyloid beta peptide is generated by proteolytic cleavage of amyloid precursor protein (APP) by two proteases, one of which is the protein encoded by this gene. The encoded protein, a member of the peptidase A1 protein family, is a type I integral membrane glycoprotein and aspartic protease that is found mainly in the Golgi. Multiple transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, May 2011]
    Location :
    11q23.2-q23.3
    Sequence :
    Chromosome: 11; NC_000011.9 (117156402..117186972, complement)
    See BACE1 in Epigenomics, MapViewer

    Chromosome 11 - NC_000011.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100652768 Neighboring gene transgelin Neighboring gene proprotein convertase subtilisin/kexin type 7 Neighboring gene ring finger protein 214 Neighboring gene BACE1 antisense RNA Neighboring gene proline rich 13 pseudogene Neighboring gene centrosomal protein 164kDa Neighboring gene Down syndrome cell adhesion molecule like 1

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description
    NP_036236.1 AAH00006.1 ATP1B1    BIND  PubMed BACE1 interacts with ATP1B1 (Na/K-ATPase, beta-subunit). This interaction was modelled on a demonstrated interaction between mouse BACE1 and human Na/K-ATPase, beta-subunit. 
    NP_036236.1 AAH14961.1 CMPK1    BIND  PubMed BACE1 interacts with UMP-CMPK. This interaction was modelled on a demonstrated interaction between mouse BACE1 and human UMP-CMPK. 
    NP_036236.1 NP_112188.1 ITM2C    BIND  PubMed BACE1 interacts with ITM2C (BRI3). 
    NP_036236.1 NP_003676.1 KHSRP    BIND  PubMed BACE1 interacts with KHSRP. This interaction was modelled on a demonstrated interaction between mouse BACE1 and human KHSRP. 
    NP_036236.1 NP_056146.1 NCSTN    BIND  PubMed Nicastrin interacts with BACE1. 
    NP_036236.1 NP_005304.3 PDIA3    BIND  PubMed BACE1 interacts with PDIA3 (ERp60). This interaction was modelled on a demonstrated interaction between mouse BACE1 and human PDIA3. 
    NP_036236.1 NP_002769.1 PSAP    BIND  PubMed BACE1 interacts with PSAP (prosaposin). This interaction was modelled on a demonstrated interaction between mouse BACE1 and human prosaposin. 
    NP_036236.1 NP_005484.2 RANBP9    BIND  PubMed BACE1 interacts with RANBP9 (RANBPM). This interaction was modelled on a demonstrated interaction between mouse BACE1 and human RANBPM. 
    P56817 P05067 APP    HPRD  PubMed  
    P56817 P05026 ATP1B1    HPRD  PubMed  
    P56817 O95415 BRI3    HPRD  PubMed  
    P56817 P30085 CMPK1    HPRD  PubMed  
    P56817 P48730 CSNK1D    HPRD  PubMed  
    P56817 P09958 FURIN    HPRD  PubMed  
    P56817 Q9UJY4 GGA2    HPRD  PubMed  
    P56817 Q9NQX7 ITM2C    HPRD  PubMed  
    P56817 Q92945 KHSRP    HPRD  PubMed  
    P56817 Q07954 LRP1    HPRD  PubMed  
    P56817 P08253 MMP2    HPRD  PubMed  
    P56817 Q92542 NCSTN    HPRD  PubMed  
    P56817 P30101 PDIA3    HPRD  PubMed  
    P56817 O15162 PLSCR1    HPRD  PubMed  
    P56817 P07602 PSAP    HPRD  PubMed  
    P56817 P49768 PSEN1    HPRD  PubMed  
    P56817 Q96S59 RANBP9    HPRD  PubMed  
    P56817 Q14242 SELPLG    HPRD  PubMed  
    BioGRID:117154 BioGRID:117623 FBXO2    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity 
    BioGRID:117154 BioGRID:117540 GGA1    BioGRID  PubMed Affinity Capture-Western; Co-crystal Structure; FRET; Reconstituted Complex 
    BioGRID:117154 BioGRID:116697 GGA2    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:117154 BioGRID:116775 GGA3    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:117154 BioGRID:116961 NCSTN    BioGRID  PubMed Reconstituted Complex 
    BioGRID:117154 BioGRID:129116 PCSK9    BioGRID  PubMed Biochemical Activity; Reconstituted Complex 
    BioGRID:117154 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-Western 
    • Alzheimer's disease, organism-specific biosystem (from KEGG)
      Alzheimer's disease, organism-specific biosystemAlzheimer's disease (AD) is a chronic disorder that slowly destroys neurons and causes serious cognitive disability. AD is associated with senile plaques and neurofibrillary tangles (NFTs). Amyloid-b...
    • Alzheimer's disease, conserved biosystem (from KEGG)
      Alzheimer's disease, conserved biosystemAlzheimer's disease (AD) is a chronic disorder that slowly destroys neurons and causes serious cognitive disability. AD is associated with senile plaques and neurofibrillary tangles (NFTs). Amyloid-b...
    • Alzheimers Disease, organism-specific biosystem (from WikiPathways)
      Alzheimers Disease, organism-specific biosystemThis pathway displays current genes, proteolytic events and other processes associated with the progression of Alzheimer's disease. This pathway was adapted from KEGG on 10/7/2011. Note: mitochondria...

    Markers

    Homology

    Clone Names

    • FLJ90568, KIAA1149

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    aspartic-type endopeptidase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    beta-aspartyl-peptidase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enzyme binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    beta-amyloid metabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane protein ectodomain proteolysis TAS
    Traceable Author Statement
    more info
    PubMed 
    proteolysis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cell surface IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasmic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral to membrane NAS
    Non-traceable Author Statement
    more info
    PubMed 
    integral to plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    beta-secretase 1
    Names
    beta-secretase 1
    asp 2
    memapsin-2
    APP beta-secretase
    aspartyl protease 2
    beta-site APP cleaving enzyme 1
    beta-secretase 1 precursor variant 1
    transmembrane aspartic proteinase Asp2
    membrane-associated aspartic protease 2
    beta-site amyloid beta A4 precursor protein-cleaving enzyme
    NP_001193977.1
    NP_001193978.1
    NP_036236.1
    NP_620427.1
    NP_620428.1
    NP_620429.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029372.1 RefSeqGene

      Range
      5001..35571
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001207048.1NP_001193977.1  beta-secretase 1 isoform E

      Status: REVIEWED

      Description
      Transcript Variant: This variant (e) lacks two exons from the 5' end and has an alternate 5' exon, compared to variant a. The resulting isoform (E) has a shorter and distinct N-terminus, compared to isoform A.
      Source sequence(s)
      AB177847, AK296535, BM996673, DC343475
      Consensus CDS
      CCDS55787.1
      UniProtKB/TrEMBL
      B7Z3Z4
      UniProtKB/TrEMBL
      Q5W9H2
      Conserved Domains (1) summary
      cd05473
      Location:18337
      Blast Score: 1646
      beta_secretase_like; Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease.
    2. NM_001207049.1NP_001193978.1  beta-secretase 1 isoform F

      Status: REVIEWED

      Description
      Transcript Variant: This variant (f) lacks two exons from the 5' end and has an alternate 5' exon and an alternate splice site in the coding region, compared to variant a. The resulting isoform (F) has a shorter and distinct N-terminus and lacks an internal segment, compared to isoform A.
      Source sequence(s)
      AB032975, AK296015, BM996673, DC343475
      Consensus CDS
      CCDS55786.1
      UniProtKB/TrEMBL
      B7Z3K2
      UniProtKB/Swiss-Prot
      P56817
      Conserved Domains (1) summary
      cl11403
      Location:18312
      Blast Score: 1477
      pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases.
    3. NM_012104.4NP_036236.1  beta-secretase 1 isoform A preproprotein

      Status: REVIEWED

      Description
      Transcript Variant: This variant (a) is the longest transcript and it encodes the longest isoform (A).
      Source sequence(s)
      AB032975, BC065492, BM996673
      Consensus CDS
      CCDS8383.1
      UniProtKB/Swiss-Prot
      P56817
      Related
      ENSP00000318585, OTTHUMP00000218630, ENST00000313005, OTTHUMT00000361505
      Conserved Domains (2) summary
      cd05473
      Location:72437
      Blast Score: 1903
      beta_secretase_like; Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease.
      pfam00026
      Location:75416
      Blast Score: 386
      Asp; Eukaryotic aspartyl protease
    4. NM_138971.3NP_620427.1  beta-secretase 1 isoform C preproprotein

      Status: REVIEWED

      Description
      Transcript Variant: This variant (c) has an alternate splice site in the coding region, compared to variant a. The resulting isoform (C) lacks an internal segment, compared to isoform A.
      Source sequence(s)
      AB032975, BC065492, BM996673
      Consensus CDS
      CCDS44740.1
      UniProtKB/Swiss-Prot
      P56817
      Conserved Domains (2) summary
      cd05473
      Location:72393
      Blast Score: 1609
      beta_secretase_like; Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease.
      pfam00026
      Location:75372
      Blast Score: 303
      Asp; Eukaryotic aspartyl protease
    5. NM_138972.3NP_620428.1  beta-secretase 1 isoform B preproprotein

      Status: REVIEWED

      Description
      Transcript Variant: This variant (b) has an alternate splice site in the coding region, compared to variant a. The resulting isoform (B) lacks an internal segment, compared to isoform A.
      Source sequence(s)
      AB032975, BC065492, BM996673
      Consensus CDS
      CCDS44739.1
      UniProtKB/Swiss-Prot
      P56817
      Conserved Domains (2) summary
      cd05473
      Location:72412
      Blast Score: 1734
      beta_secretase_like; Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease.
      pfam00026
      Location:75391
      Blast Score: 344
      Asp; Eukaryotic aspartyl protease
    6. NM_138973.3NP_620429.1  beta-secretase 1 isoform D preproprotein

      Status: REVIEWED

      Description
      Transcript Variant: This variant (d) has an alternate splice junction in the coding region, compared to variant a. The resulting isoform (D) lacks an internal segment, compared to isoform A.
      Source sequence(s)
      AB032975, BC065492, BM996673
      Consensus CDS
      CCDS44741.1
      UniProtKB/Swiss-Prot
      P56817
      Conserved Domains (2) summary
      pfam00026
      Location:75347
      Blast Score: 278
      Asp; Eukaryotic aspartyl protease
      cl11403
      Location:72368
      Blast Score: 1409
      pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases.

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000011.9 Reference GRCh37.p10 Primary Assembly

      Range
      117156402..117186972, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000143.1 Alternate HuRef

      Range
      113090543..113121018, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018922.1 Alternate CHM1_1.0

      Range
      117019975..117050546, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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