These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_029372.1 RefSeqGene
- Range
- 5001..35571
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001207048.1 → NP_001193977.1 beta-secretase 1 isoform E
Status: REVIEWED
- Description
- Transcript Variant: This variant (e) lacks two exons from the 5' end and has an alternate 5' exon, compared to variant a. The resulting isoform (E) has a shorter and distinct N-terminus, compared to isoform A.
- Source sequence(s)
-
AB177847, AK296535, BM996673, DC343475
- Consensus CDS
-
CCDS55787.1
- UniProtKB/TrEMBL
-
B7Z3Z4
- UniProtKB/TrEMBL
-
Q5W9H2
- Conserved Domains (1) summary
-
- cd05473
Location:18 – 337
Blast Score: 1646
- beta_secretase_like; Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease.
-
NM_001207049.1 → NP_001193978.1 beta-secretase 1 isoform F
Status: REVIEWED
- Description
- Transcript Variant: This variant (f) lacks two exons from the 5' end and has an alternate 5' exon and an alternate splice site in the coding region, compared to variant a. The resulting isoform (F) has a shorter and distinct N-terminus and lacks an internal segment, compared to isoform A.
- Source sequence(s)
-
AB032975, AK296015, BM996673, DC343475
- Consensus CDS
-
CCDS55786.1
- UniProtKB/TrEMBL
-
B7Z3K2
- UniProtKB/Swiss-Prot
-
P56817
- Conserved Domains (1) summary
-
- cl11403
Location:18 – 312
Blast Score: 1477
- pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases.
-
NM_012104.4 → NP_036236.1 beta-secretase 1 isoform A preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (a) is the longest transcript and it encodes the longest isoform (A).
- Source sequence(s)
-
AB032975, BC065492, BM996673
- Consensus CDS
-
CCDS8383.1
- UniProtKB/Swiss-Prot
-
P56817
- Related
- ENSP00000318585, OTTHUMP00000218630, ENST00000313005, OTTHUMT00000361505
- Conserved Domains (2) summary
-
- cd05473
Location:72 – 437
Blast Score: 1903
- beta_secretase_like; Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease.
- pfam00026
Location:75 – 416
Blast Score: 386
- Asp; Eukaryotic aspartyl protease
-
NM_138971.3 → NP_620427.1 beta-secretase 1 isoform C preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (c) has an alternate splice site in the coding region, compared to variant a. The resulting isoform (C) lacks an internal segment, compared to isoform A.
- Source sequence(s)
-
AB032975, BC065492, BM996673
- Consensus CDS
-
CCDS44740.1
- UniProtKB/Swiss-Prot
-
P56817
- Conserved Domains (2) summary
-
- cd05473
Location:72 – 393
Blast Score: 1609
- beta_secretase_like; Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease.
- pfam00026
Location:75 – 372
Blast Score: 303
- Asp; Eukaryotic aspartyl protease
-
NM_138972.3 → NP_620428.1 beta-secretase 1 isoform B preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (b) has an alternate splice site in the coding region, compared to variant a. The resulting isoform (B) lacks an internal segment, compared to isoform A.
- Source sequence(s)
-
AB032975, BC065492, BM996673
- Consensus CDS
-
CCDS44739.1
- UniProtKB/Swiss-Prot
-
P56817
- Conserved Domains (2) summary
-
- cd05473
Location:72 – 412
Blast Score: 1734
- beta_secretase_like; Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease.
- pfam00026
Location:75 – 391
Blast Score: 344
- Asp; Eukaryotic aspartyl protease
-
NM_138973.3 → NP_620429.1 beta-secretase 1 isoform D preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (d) has an alternate splice junction in the coding region, compared to variant a. The resulting isoform (D) lacks an internal segment, compared to isoform A.
- Source sequence(s)
-
AB032975, BC065492, BM996673
- Consensus CDS
-
CCDS44741.1
- UniProtKB/Swiss-Prot
-
P56817
- Conserved Domains (2) summary
-
- pfam00026
Location:75 – 347
Blast Score: 278
- Asp; Eukaryotic aspartyl protease
- cl11403
Location:72 – 368
Blast Score: 1409
- pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases.
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p10 Primary Assembly
Genomic
-
NC_000011.9 Reference GRCh37.p10 Primary Assembly
- Range
- 117156402..117186972, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000143.1 Alternate HuRef
- Range
- 113090543..113121018, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate CHM1_1.0
Genomic
-
NC_018922.1 Alternate CHM1_1.0
- Range
- 117019975..117050546, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)