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LEPROTL1 leptin receptor overlapping transcript-like 1 [ Homo sapiens (human) ]

Gene ID: 23484, updated on 13-Sep-2014
Official Symbol
LEPROTL1provided by HGNC
Official Full Name
leptin receptor overlapping transcript-like 1provided by HGNC
Primary source
HGNC:HGNC:6555
Locus tag
My047
See related
Ensembl:ENSG00000104660; HPRD:09551; MIM:607338; Vega:OTTHUMG00000163820
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Vps55; my047; HSPC112
See LEPROTL1 in Epigenomics, MapViewer
Location:
8p12
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCh38 (GCF_000001405.26) 8 NC_000008.11 (30095406..30137706)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (29952922..29995222)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase 1 pseudogene 1 Neighboring gene store-operated calcium entry-associated regulatory factor Neighboring gene ribosomal protein S15a pseudogene 24 Neighboring gene membrane bound O-acyltransferase domain containing 4 Neighboring gene dynactin 6 Neighboring gene heat shock 70kDa protein 8 pseudogene 11

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NHGRI GWAS Catalog

Description
Genome-wide meta-analysis identifies new susceptibility loci for migraine.
NHGRI GWA Catalog
Products Interactant Other Gene Complex Source Pubs Description

Markers

Potential readthrough

Included gene: DCTN6

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
leptin receptor overlapping transcript-like 1
Names
leptin receptor overlapping transcript-like 1
endospanin-2

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128208.1NP_001121680.1  leptin receptor overlapping transcript-like 1 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' coding region and UTR, compared to variant 1, resulting in a protein (isoform 2) with a distinct and longer C-terminus, compared to isoform 1.
    Source sequence(s)
    AC026979, AC044849, DA258969
    Consensus CDS
    CCDS47834.1
    UniProtKB/Swiss-Prot
    O95214
    Conserved Domains (1) summary
    pfam04133
    Location:7100
    Vps55; Vacuolar protein sorting 55
  2. NM_015344.2NP_056159.2  leptin receptor overlapping transcript-like 1 isoform 1

    See proteins identical to NP_056159.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript but encodes the shorter isoform (1).
    Source sequence(s)
    AC044849, AY358674, DA258969
    Consensus CDS
    CCDS6075.1
    UniProtKB/Swiss-Prot
    O95214
    UniProtKB/TrEMBL
    Q6FHL7
    Related
    ENSP00000314625, OTTHUMP00000225045, ENST00000321250, OTTHUMT00000375771
    Conserved Domains (1) summary
    pfam04133
    Location:7126
    Vps55; Vacuolar protein sorting 55

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38 Primary Assembly

Genomic

  1. NC_000008.11 

    Range
    30095406..30137706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate HuRef

Genomic

  1. AC_000140.1 

    Range
    28497678..28540006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018919.2 

    Range
    30155269..30197555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)