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    ATP13A2 ATPase type 13A2 [ Homo sapiens (human) ]

    Gene ID: 23400, updated on 16-Jun-2013
    Official Symbol
    ATP13A2provided by HGNC
    Official Full Name
    ATPase type 13A2provided by HGNC
    Primary source
    HGNC:30213
    Locus tag
    RP1-37C10.4
    See related
    Ensembl:ENSG00000159363; HPRD:13677; MIM:610513; Vega:OTTHUMG00000002293
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CLN12; KRPPD; PARK9; HSA9947; RP1-37C10.4
    Summary
    This gene encodes a member of the P5 subfamily of ATPases which transports inorganic cations as well as other substrates. Mutations in this gene are associated with Kufor-Rakeb syndrome (KRS), also referred to as Parkinson disease 9. Multiple transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Nov 2008]
    Location :
    1p36
    Sequence :
    Chromosome: 1; NC_000001.10 (17312453..17338423, complement)
    See ATP13A2 in Epigenomics, MapViewer

    Chromosome 1 - NC_000001.10Genomic Context describing neighboring genes Neighboring gene ciliary rootlet coiled-coil, rootletin Neighboring gene microfibrillar-associated protein 2 Neighboring gene succinate dehydrogenase complex, subunit B, iron sulfur (Ip) Neighboring gene peptidyl arginine deiminase, type II

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Parkinson disease 9

    Summary from GeneReviews: Parkinson Disease Overview Go to GeneReviews

    Disease Characteristics
    Parkinsonism refers to all clinical states characterized by tremor, muscle rigidity, and slowed movement (bradykinesia). Parkinson disease is the primary and most common form of parkinsonism. Psychiatric manifestations, which include depression and visual hallucinations, are common but not uniformly present. Dementia eventually occurs in at least 20% of cases. Generally, individuals with onset before age 20 years are considered to have juvenile-onset Parkinson disease, those with onset before age 50 years are classified as having early-onset Parkinson disease, and those with onset after age 50 years are considered to have late-onset Parkinson disease.
    Diagnosis Testing
    The diagnosis of Parkinson disease is based solely on the clinical findings of tremor, rigidity, and bradykinesia. A good response to levodopa and asymmetric onset of limb involvement are generally regarded as supporting diagnostic features. The cardinal pathologic feature of Parkinson disease is the loss of dopaminergic neurons in the substantia nigra with intracytoplasmic inclusions (Lewy bodies) in the remaining, intact nigral neurons. The genetic cause of some forms of Parkinson disease has been identified. Seven genes have been implicated. Mutations in three known genes, SNCA (PARK1), UCHL1 (PARK5), and LRRK2 (PARK8) and one mapped gene (PARK3) result in autosomal dominant Parkinson disease. Mutations in three known genes, PARK2 (PARK2), PARK7 (PARK7), and PINK1 (PARK6), result in autosomal recessive Parkinson disease. Three susceptibility genes have been identified.
    Genetic Counseling
    Parkinson disease can be inherited in an autosomal dominant or autosomal recessive manner; however, most cases of Parkinson disease are thought to result from the effects of multiple genes as well as environmental risk factors. Genetic counseling of affected individuals and their family members must be done on a family-by-family basis. The risk to first-degree relatives of a person with Parkinson disease varies from study to study and from country to country. In families with a non-mendelian form of Parkinson disease, first-degree relatives of an affected individual are between 2.7 and 3.5 times more likely to develop Parkinson disease than individuals without a family history of Parkinson disease. Their cumulative lifetime risk of developing Parkinson disease is therefore between 3% and 7%.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:116973 BioGRID:116520 AAK1    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:116973 BioGRID:107002 ATP5G2    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:107133 BNIP3L    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:116973 BioGRID:107329 CCKBR    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:120259 CMTM6    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:107674 COL1A1    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:113607 CXCR4    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:121321 CXCR7    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:125335 CYGB    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:115532 DCAF7    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:121211 EMC7    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:108448 F2R    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:131897 FAM111B    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:123067 FAM192A    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:119541 FAM8A1    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:117270 FKBP8    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:122440 FUNDC2    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:108853 GAK    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:116973 BioGRID:109103 GPR21    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:115330 HDAC6    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:116973 BioGRID:128490 HIPK1    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:109544 HSPA8    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:116973 BioGRID:109611 ICAM2    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:110110 LAMP1    BioGRID  PubMed Co-localization 
    BioGRID:116973 BioGRID:116159 LMAN2    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:110219 LRP6    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:123945 MEX3B    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:116709 MYCBP2    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:110946 NPY1R    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:114779 NRXN1    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:111002 OCA2    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:121833 OSTC    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:121066 PCDHB10    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:120542 PCMTD2    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:115434 PDIA6    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:111806 RAB5A    BioGRID  PubMed Co-localization 
    BioGRID:116973 BioGRID:113624 RAB7A    BioGRID  PubMed Co-localization 
    BioGRID:116973 BioGRID:114768 RAB9A    BioGRID  PubMed Co-localization 
    BioGRID:116973 BioGRID:116152 SEC61B    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:115133 SPCS2    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:116815 SYT11    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:116973 BioGRID:123554 TSPAN14    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:116973 BioGRID:125598 UBE2J2    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:112711 VAMP2    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:120039 WDR5B    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:119522 WDR83OS    BioGRID  PubMed Two-hybrid 
    BioGRID:116973 BioGRID:116103 YIF1A    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:116973 BioGRID:1205545 nef    BioGRID  PubMed Two-hybrid 

    Markers

    Homology

    Clone Names

    • FLJ26510

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    cation-transporting ATPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
     
    Component Evidence Code Pubs
    integral to membrane IEA
    Inferred from Electronic Annotation
    more info
     
    lysosome IDA
    Inferred from Direct Assay
    more info
     
    Preferred Names
    probable cation-transporting ATPase 13A2
    Names
    probable cation-transporting ATPase 13A2
    putative ATPase
    NP_001135445.1
    NP_001135446.1
    NP_071372.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009054.1 RefSeqGene

      Range
      5001..30971
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001141973.1NP_001135445.1  probable cation-transporting ATPase 13A2 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in a shorter protein (isoform 2). The transcript contains an upstream ORF that could encode a 103aa protein and may modulate translation from the downstream ORF encoding isoform 2.
      Source sequence(s)
      AK290210, AL049569, AY461712
      Consensus CDS
      CCDS44073.1
      UniProtKB/Swiss-Prot
      Q9NQ11
      Related
      ENSP00000413307, OTTHUMP00000221711, ENST00000452699, OTTHUMT00000368161
      Conserved Domains (5) summary
      TIGR01657
      Location:391073
      Blast Score: 3381
      P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
      pfam00122
      Location:271490
      Blast Score: 278
      E1-E2_ATPase; E1-E2 ATPase
      pfam12409
      Location:39164
      Blast Score: 238
      P5-ATPase; P5-type ATPase cation transporter
      pfam13246
      Location:623660
      Blast Score: 96
      Hydrolase_like2; Putative hydrolase of sodium-potassium ATPase alpha subunit
      cl11391
      Location:845894
      Blast Score: 109
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    2. NM_001141974.1NP_001135446.1  probable cation-transporting ATPase 13A2 isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 5' coding region, and lacks two alternate exons in the 3' coding region which results in a frameshift, compared to variant 1. The resulting protein (isoform 3) is shorter and has a distinct C-terminus, compared to isoform 1. The transcript contains an upstream ORF that could encode a 103aa protein and may modulate translation from the downstream ORF encoding isoform 3.
      Source sequence(s)
      AL049569, BC030267
      Consensus CDS
      CCDS44072.1
      UniProtKB/TrEMBL
      Q5JXY1
      UniProtKB/Swiss-Prot
      Q9NQ11
      Related
      ENSP00000341115, OTTHUMP00000002400, ENST00000341676, OTTHUMT00000006618
      Conserved Domains (5) summary
      TIGR01657
      Location:391034
      Blast Score: 3219
      P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
      pfam00122
      Location:271490
      Blast Score: 278
      E1-E2_ATPase; E1-E2 ATPase
      pfam12409
      Location:39164
      Blast Score: 237
      P5-ATPase; P5-type ATPase cation transporter
      pfam13246
      Location:623660
      Blast Score: 96
      Hydrolase_like2; Putative hydrolase of sodium-potassium ATPase alpha subunit
      cl11391
      Location:806855
      Blast Score: 109
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    3. NM_022089.2NP_071372.1  probable cation-transporting ATPase 13A2 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). The transcript contains an upstream ORF that could encode a 103aa protein and may modulate translation from the downstream ORF encoding isoform 1.
      Source sequence(s)
      AL049569, AL354615
      Consensus CDS
      CCDS175.1
      UniProtKB/Swiss-Prot
      Q9NQ11
      Related
      ENSP00000327214, OTTHUMP00000002399, ENST00000326735, OTTHUMT00000006617
      Conserved Domains (5) summary
      TIGR01657
      Location:391078
      Blast Score: 3383
      P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
      pfam00122
      Location:276495
      Blast Score: 278
      E1-E2_ATPase; E1-E2 ATPase
      pfam12409
      Location:39169
      Blast Score: 233
      P5-ATPase; P5-type ATPase cation transporter
      pfam13246
      Location:628665
      Blast Score: 96
      Hydrolase_like2; Putative hydrolase of sodium-potassium ATPase alpha subunit
      cl11391
      Location:850899
      Blast Score: 109
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000001.10 Reference GRCh37.p10 Primary Assembly

      Range
      17312453..17338423, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000133.1 Alternate HuRef

      Range
      15556532..15582505, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018912.1 Alternate CHM1_1.0

      Range
      17518523..17544567, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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