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Atxn2l ataxin 2-like [ Mus musculus (house mouse) ]

Gene ID: 233871, updated on 8-May-2016
Official Symbol
Atxn2lprovided by MGI
Official Full Name
ataxin 2-likeprovided by MGI
Primary source
MGI:MGI:2446242
See related
Ensembl:ENSMUSG00000032637 Vega:OTTMUSG00000042400
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A2D; A2LG; A2RP; A2lp; Atxnl2
Orthologs
Location:
7; 7 F3
Exon count:
24
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 7 NC_000073.6 (126491708..126503644, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (133635222..133646816, complement)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene SH2B adaptor protein 1 Neighboring gene Tu translation elongation factor, mitochondrial Neighboring gene uncharacterized LOC105243053 Neighboring gene eukaryotic translation initiation factor 3, subunit C Neighboring gene ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) Neighboring gene microRNA 7059

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
poly(A) RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
regulation of cytoplasmic mRNA processing body assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
regulation of cytoplasmic mRNA processing body assembly ISO
Inferred from Sequence Orthology
more info
 
stress granule assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
stress granule assembly ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytoplasmic stress granule IBA
Inferred from Biological aspect of Ancestor
more info
 
cytoplasmic stress granule ISO
Inferred from Sequence Orthology
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
nuclear speck ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
ataxin-2-like protein
Names
ataxin 2 related protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183020.1NP_898841.1  ataxin-2-like protein

    See identical proteins and their annotated locations for NP_898841.1

    Status: PROVISIONAL

    Source sequence(s)
    BC054483
    Consensus CDS
    CCDS21831.1
    UniProtKB/Swiss-Prot
    Q7TQH0
    Related
    ENSMUSP00000035415, OTTMUSP00000062634, ENSMUST00000040202, OTTMUST00000111759
    Conserved Domains (2) summary
    pfam06741
    Location:262331
    LsmAD; LsmAD domain
    pfam14438
    Location:120188
    SM-ATX; Ataxin 2 SM domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p3 C57BL/6J

    Range
    126491708..126503644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006507725.2XP_006507788.1  

    UniProtKB/Swiss-Prot
    Q7TQH0
    Conserved Domains (2) summary
    pfam06741
    Location:262331
    LsmAD; LsmAD domain
    pfam14438
    Location:120188
    SM-ATX; Ataxin 2 SM domain
  2. XM_006507721.2XP_006507784.1  

    UniProtKB/TrEMBL
    A0A0U1RPL0
    Related
    ENSMUSP00000146023, OTTMUSP00000074560, ENSMUST00000206577, OTTMUST00000142975
    Conserved Domains (2) summary
    pfam06741
    Location:262331
    LsmAD; LsmAD domain
    pfam14438
    Location:120188
    SM-ATX; Ataxin 2 SM domain
  3. XM_006507723.2XP_006507786.1  

    See identical proteins and their annotated locations for XP_006507786.1

    Conserved Domains (2) summary
    pfam06741
    Location:262331
    LsmAD; LsmAD domain
    pfam14438
    Location:120188
    SM-ATX; Ataxin 2 SM domain
  4. XM_006507722.2XP_006507785.1  

    See identical proteins and their annotated locations for XP_006507785.1

    Conserved Domains (2) summary
    pfam06741
    Location:262331
    LsmAD; LsmAD domain
    pfam14438
    Location:120188
    SM-ATX; Ataxin 2 SM domain
  5. XM_006507720.2XP_006507783.1  

    See identical proteins and their annotated locations for XP_006507783.1

    Conserved Domains (2) summary
    pfam06741
    Location:262331
    LsmAD; LsmAD domain
    pfam14438
    Location:120188
    SM-ATX; Ataxin 2 SM domain
  6. XM_011241775.1XP_011240077.1  

    See identical proteins and their annotated locations for XP_011240077.1

    Conserved Domains (2) summary
    pfam06741
    Location:262331
    LsmAD; LsmAD domain
    pfam14438
    Location:120188
    SM-ATX; Ataxin 2 SM domain
  7. XM_006507724.2XP_006507787.1  

    Conserved Domains (2) summary
    pfam06741
    Location:262331
    LsmAD; LsmAD domain
    pfam14438
    Location:120188
    SM-ATX; Ataxin 2 SM domain
  8. XM_006507726.1XP_006507789.1  

    See identical proteins and their annotated locations for XP_006507789.1

    UniProtKB/TrEMBL
    Q3TGG2
    Related
    ENSMUSP00000132959, OTTMUSP00000062638, ENSMUST00000167759, OTTMUST00000111762
    Conserved Domains (2) summary
    pfam06741
    Location:176245
    LsmAD; LsmAD domain
    pfam14438
    Location:34102
    SM-ATX; Ataxin 2 SM domain
  9. XM_006507728.1XP_006507791.1  

    Conserved Domains (1) summary
    pfam09770
    Location:350594
    PAT1; Topoisomerase II-associated protein PAT1

RNA

  1. XR_378238.2 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000029.1 Alternate Mm_Celera

    Range
    126344285..126355877 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)