Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    RPGRIP1L RPGRIP1-like [ Homo sapiens (human) ]

    Gene ID: 23322, updated on 14-May-2013
    Official Symbol
    RPGRIP1Lprovided by HGNC
    Official Full Name
    RPGRIP1-likeprovided by HGNC
    Primary source
    HGNC:29168
    See related
    Ensembl:ENSG00000103494; HPRD:17204; MIM:610937; Vega:OTTHUMG00000173125
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FTM; MKS5; CORS3; JBTS7; NPHP8
    Summary
    The protein encoded by this gene can localize to the basal body-centrosome complex or to primary cilia and centrosomes in ciliated cells. The encoded protein has been found to interact with nephrocystin-4. Defects in this gene are a cause of Joubert syndrome type 7 (JBTS7) and Meckel syndrome type 5 (MKS5). Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
    Location :
    16q12.2
    Sequence :
    Chromosome: 16; NC_000016.9 (53633818..53737771, complement)
    See RPGRIP1L in Epigenomics, MapViewer

    Chromosome 16 - NC_000016.9Genomic Context describing neighboring genes Neighboring gene u3 small nucleolar ribonucleoprotein protein MPP10-like Neighboring gene retinoblastoma-like 2 (p130) Neighboring gene AKT interacting protein Neighboring gene fat mass and obesity associated Neighboring gene FTO intronic transcript 1 (non-protein coding) Neighboring gene uncharacterized LOC100996338

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Joubert syndrome 7

    Summary from GeneReviews: Joubert Syndrome and Related Disorders Go to GeneReviews

    Disease Characteristics
    Classic Joubert syndrome is characterized by three primary findings: A distinctive cerebellar and brain stem malformation called the molar tooth sign (MTS) . Hypotonia. Developmental delays . Often these findings are accompanied by episodic tachypnea or apnea and/or atypical eye movements. In general, the breathing abnormalities improve with age, truncal ataxia develops over time, and acquisition of gross motor milestones is delayed. Cognitive abilities are variable, ranging from severe intellectual disability to normal. The designation Joubert syndrome and related disorders (JSRD) is used to describe individuals with JS who have additional findings including retinal dystrophy, renal disease, ocular colobomas, occipital encephalocele, hepatic fibrosis, polydactyly, oral hamartomas, and endocrine abnormalities. Both intra- and interfamilial variation are seen.
    Diagnosis Testing
    The diagnosis of JSRD is based on the presence of characteristic clinical features and magnetic resonance images (MRI) through the junction of the midbrain and pons (isthmus region) that resemble a molar tooth. To date mutations in one of the following 18 genes are identified in about 50% of individuals with a JSRD: NPHP1, CEP290, AHI1, TMEM67 (MKS3), RPGRIP1L, CC2D2A, ARL13B, INPP5E, OFD1, TMEM216, KIF7, TCTN1, TCTN2, TMEM237, CEP41, TMEM138, C5orf42, and TTC21B; the other genes in which mutations are causative are unknown. Molecular genetic testing is clinically available for most of the known genes.
    Genetic Counseling
    JSRDs are predominantly inherited in an autosomal recessive manner. JSRD caused by mutation of OFD1 is inherited in an X-linked manner. Digenic inheritance has been reported. For autosomal recessive inheritance: at conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk family members and prenatal testing for pregnancies at increased risk are possible if the disease-causing mutations have been identified in the family. For pregnancies at known increased risk for Joubert syndrome prenatal diagnosis by ultrasound examination with or without fetal MRI has been successful.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:116911 BioGRID:1172319 PPP1CA    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:116911 BioGRID:112777 TBXA2R    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:116911 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Clone Names

    • KIAA1005, DKFZp686C0668

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    thromboxane A2 receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    camera-type eye development IEA
    Inferred from Electronic Annotation
    more info
     
    cerebellum development IEA
    Inferred from Electronic Annotation
    more info
     
    cilium assembly IEA
    Inferred from Electronic Annotation
    more info
     
    corpus callosum development IEA
    Inferred from Electronic Annotation
    more info
     
    determination of left/right symmetry IEA
    Inferred from Electronic Annotation
    more info
     
    embryonic forelimb morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    embryonic hindlimb morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    head development IEA
    Inferred from Electronic Annotation
    more info
     
    in utero embryonic development IEA
    Inferred from Electronic Annotation
    more info
     
    kidney development IEA
    Inferred from Electronic Annotation
    more info
     
    lateral ventricle development IEA
    Inferred from Electronic Annotation
    more info
     
    liver development IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of G-protein coupled receptor protein signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    neural tube patterning IEA
    Inferred from Electronic Annotation
    more info
     
    nose development IEA
    Inferred from Electronic Annotation
    more info
     
    olfactory bulb development IEA
    Inferred from Electronic Annotation
    more info
     
    pericardium development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of smoothened signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cell-cell junction IDA
    Inferred from Direct Assay
    more info
     
    centrosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cilium axoneme IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    microtubule basal body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    tight junction IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    protein fantom
    Names
    protein fantom
    fantom homolog
    nephrocystin-8
    RPGR-interacting protein 1-like protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008991.2 RefSeqGene

      Range
      5001..108954
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001127897.1NP_001121369.1  protein fantom isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks two alternate in-frame exons compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform a.
      Source sequence(s)
      AB023222, BM683568, BQ576116, CR749645, DA156084, DC423209
      Consensus CDS
      CCDS45486.1
      UniProtKB/Swiss-Prot
      Q68CZ1
      Conserved Domains (2) summary
      cd00030
      Location:792891
      Blast Score: 163
      C2; C2 domain
      pfam11618
      Location:631737
      Blast Score: 424
      DUF3250; Protein of unknown function (DUF3250)
    2. NM_015272.2NP_056087.2  protein fantom isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
      Source sequence(s)
      AB023222, AC007497, AK026552, AK096333, BQ576116, CD674885, CR749645
      Consensus CDS
      CCDS32447.1
      UniProtKB/Swiss-Prot
      Q68CZ1
      Related
      ENSP00000369257, OTTHUMP00000250116, ENST00000379925, OTTHUMT00000422187
      Conserved Domains (2) summary
      cd00030
      Location:792891
      Blast Score: 164
      C2; C2 domain
      pfam11618
      Location:631737
      Blast Score: 425
      DUF3250; Protein of unknown function (DUF3250)

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000016.9 Reference GRCh37.p10 Primary Assembly

      Range
      53633818..53737771, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000148.1 Alternate HuRef

      Range
      39520935..39624598, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018927.1 Alternate CHM1_1.0

      Range
      54646991..54751515, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

      Recent activity

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...