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Jazf1 JAZF zinc finger 1 [ Mus musculus (house mouse) ]

Gene ID: 231986, updated on 14-May-2016
Official Symbol
Jazf1provided by MGI
Official Full Name
JAZF zinc finger 1provided by MGI
Primary source
MGI:MGI:2141450
See related
Ensembl:ENSMUSG00000063568
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Jaz1; Tip27; AI591476; C820002C15
Orthologs
Location:
6 B3; 6 25.74 cM
Exon count:
8
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 6 NC_000072.6 (52768065..53068624, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (52718062..53018618, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene 3-hydroxyisobutyrate dehydrogenase Neighboring gene predicted gene, 33047 Neighboring gene Tax1 (human T cell leukemia virus type I) binding protein 1 Neighboring gene predicted gene 15572 Neighboring gene predicted gene, 38813 Neighboring gene predicted gene, 33219 Neighboring gene dynactin subunit 5 pseudogene Neighboring gene predicted gene, 33097 Neighboring gene quinolinate phosphoribosyltransferase pseudogene Neighboring gene predicted gene 4872

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
transcription corepressor activity ISA
Inferred from Sequence Alignment
more info
PubMed 
Process Evidence Code Pubs
lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
negative regulation of transcription from RNA polymerase II promoter ISA
Inferred from Sequence Alignment
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
transcriptional repressor complex ISA
Inferred from Sequence Alignment
more info
PubMed 
Preferred Names
juxtaposed with another zinc finger protein 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001168277.1NP_001161749.1  juxtaposed with another zinc finger protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001161749.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AC107317, AC117212, AK050474
    UniProtKB/Swiss-Prot
    Q80ZQ5
    Conserved Domains (1) summary
    COG5189
    Location:105166
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
  2. NM_173406.3NP_775582.2  juxtaposed with another zinc finger protein 1 isoform 1

    See identical proteins and their annotated locations for NP_775582.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC117212, AK050474, BY278789
    Consensus CDS
    CCDS20152.1
    UniProtKB/Swiss-Prot
    Q80ZQ5
    Related
    ENSMUSP00000074129, OTTMUSP00000028177, ENSMUST00000074541, OTTMUST00000058219
    Conserved Domains (1) summary
    COG5189
    Location:169230
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p3 C57BL/6J

    Range
    52768065..53068624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006505943.2XP_006506006.1  

    Conserved Domains (1) summary
    COG5189
    Location:142203
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
  2. XM_011241295.1XP_011239597.1  

    See identical proteins and their annotated locations for XP_011239597.1

    UniProtKB/Swiss-Prot
    Q80ZQ5
    Conserved Domains (1) summary
    COG5189
    Location:105166
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Alternate Mm_Celera

Genomic

  1. AC_000028.1 Alternate Mm_Celera

    Range
    53292434..53596225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)